Q1CK56 (Q1CK56_YERPN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
4-aminobutyrate aminotransferase EMBL ABG17624.1
EC=2.6.1.19 EMBL ABG17624.1

Gene names

Ordered Locus Names:

YPN_1294 EMBL ABG17624.1

Organism

Yersinia pestis bv. Antiqua (strain Nepal516) [Complete proteome] [HAMAP] EMBL ABG17624.1

Taxonomic identifier

377628 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia › Yersinia pestis

Protein attributes

Sequence length	437 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003560
Molecular function	Aminotransferase EMBL ABG17624.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	gamma-aminobutyric acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	4-aminobutyrate transaminase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1CK56 [UniParc]. Last modified July 11, 2006. Version 1. Checksum: 27AF3A9835398EDE	FASTA	437	47,183
	10 20 30 40 50 60 MAYQQERIMS HRELEQRRKE ATPRGIGVLC DFYAVRAENA TLWDEQGREY IDFTAGIATL 70 80 90 100 110 120 NIGHRHPKVM AAVRQQLDQF THTAYQVVPY ASYVTLAEKI NSLAPISDSN MTAAGNSKTA 130 140 150 160 170 180 FFTTGVEAIE NAVKIARAAT GRPGVIAFSG AFHGRTLLAM ALTGRAVPYK VGFGPFPASI 190 200 210 220 230 240 FHALYPNELY GVSVEEAISS VERLFRCDIS PTQVAAILFE PIQGEGGFNI APPEFVSALR 250 260 270 280 290 300 TLCDEHGILL IADEVQTGFA RTGKLFAMEY YPDTKVDVIT MAKSLGGGMP ISAVTGRADI 310 320 330 340 350 360 MDAPLPGSLG GTYAGNPLAV AASLAVLDII AEEKLCERAL ILGAKLVDVL EKAQMSNAAI 370 380 390 400 410 420 VGIRARGSMV AVEFNDPVSG KPSPELTRAY QRQALEEGLL LLSCGVHSNV IRFLYPLTIP 430 DKQFKQAMNI LTRLLAS

References

[1]

"Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen." Chain P.S., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L. J. Bacteriol. 188:4453-4463(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nepal516 EMBL ABG17624.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000305 Genomic DNA. Translation: ABG17624.1.
RefSeq	YP_647224.1. NC_008149.1.
3D structure databases
ProteinModelPortal	Q1CK56.
ModBase	Search...
Protein-protein interaction databases
STRING	377628.YPN_1294.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG17624; ABG17624; YPN_1294.
GeneID	4125211.
KEGG	ypn:YPN_1294.
PATRIC	18601893. VBIYerPes46733_1613.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000020206.
KO	K00823.
OMA	NSFTHTA.
ProtClustDB	PRK06777.
Enzyme and pathway databases
BioCyc	YPES377628:GIXK-1346-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR004632. 4NH2But_aminotransferase_bac. IPR005814. Aminotrans_3. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit.
Pfam	PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR00700. GABAtrnsam. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1CK56_YERPN

Accession

Primary (citable) accession number: Q1CK56

Entry history

Integrated into UniProtKB/TrEMBL:	July 11, 2006
Last sequence update:	July 11, 2006
Last modified:	May 29, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)