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Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

YPN_1294

Organism
Yersinia pestis bv. Antiqua (strain Nepal516)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. 4-aminobutyrate transaminase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. gamma-aminobutyric acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciYPES377628:GIXK-1346-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
4-aminobutyrate aminotransferaseImported (EC:2.6.1.19Imported)
Gene namesi
Ordered Locus Names:YPN_1294Imported
OrganismiYersinia pestis bv. Antiqua (strain Nepal516)Imported
Taxonomic identifieri377628 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
ProteomesiUP000008936 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi377628.YPN_1294.

Structurei

3D structure databases

ProteinModelPortaliQ1CK56.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000020206.
KOiK00823.
OMAiYHAQYPN.
OrthoDBiEOG6QVRHN.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1CK56-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYQQERIMS HRELEQRRKE ATPRGIGVLC DFYAVRAENA TLWDEQGREY
60 70 80 90 100
IDFTAGIATL NIGHRHPKVM AAVRQQLDQF THTAYQVVPY ASYVTLAEKI
110 120 130 140 150
NSLAPISDSN MTAAGNSKTA FFTTGVEAIE NAVKIARAAT GRPGVIAFSG
160 170 180 190 200
AFHGRTLLAM ALTGRAVPYK VGFGPFPASI FHALYPNELY GVSVEEAISS
210 220 230 240 250
VERLFRCDIS PTQVAAILFE PIQGEGGFNI APPEFVSALR TLCDEHGILL
260 270 280 290 300
IADEVQTGFA RTGKLFAMEY YPDTKVDVIT MAKSLGGGMP ISAVTGRADI
310 320 330 340 350
MDAPLPGSLG GTYAGNPLAV AASLAVLDII AEEKLCERAL ILGAKLVDVL
360 370 380 390 400
EKAQMSNAAI VGIRARGSMV AVEFNDPVSG KPSPELTRAY QRQALEEGLL
410 420 430
LLSCGVHSNV IRFLYPLTIP DKQFKQAMNI LTRLLAS
Length:437
Mass (Da):47,183
Last modified:July 11, 2006 - v1
Checksum:i27AF3A9835398EDE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000305 Genomic DNA. Translation: ABG17624.1.
RefSeqiYP_647224.1. NC_008149.1.

Genome annotation databases

EnsemblBacteriaiABG17624; ABG17624; YPN_1294.
GeneIDi4125211.
KEGGiypn:YPN_1294.
PATRICi18601893. VBIYerPes46733_1613.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000305 Genomic DNA. Translation: ABG17624.1.
RefSeqiYP_647224.1. NC_008149.1.

3D structure databases

ProteinModelPortaliQ1CK56.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi377628.YPN_1294.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG17624; ABG17624; YPN_1294.
GeneIDi4125211.
KEGGiypn:YPN_1294.
PATRICi18601893. VBIYerPes46733_1613.

Phylogenomic databases

HOGENOMiHOG000020206.
KOiK00823.
OMAiYHAQYPN.
OrthoDBiEOG6QVRHN.

Enzyme and pathway databases

BioCyciYPES377628:GIXK-1346-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen."
    Chain P.S.G., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L.
    J. Bacteriol. 188:4453-4463(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nepal516Imported.

Entry informationi

Entry nameiQ1CK56_YERPN
AccessioniPrimary (citable) accession number: Q1CK56
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2006
Last sequence update: July 11, 2006
Last modified: April 1, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.