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Q1CJ58 (Q1CJ58_YERPN) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length196 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + thymidine = ADP + thymidine 5'-phosphate. SAAS SAAS020634 RuleBase RU000544 HAMAP-Rule MF_00124

Subunit structure

Homotetramer By similarity. SAAS SAAS020634 HAMAP-Rule MF_00124

Subcellular location

Cytoplasm By similarity SAAS SAAS020634 HAMAP-Rule MF_00124.

Sequence similarities

Belongs to the thymidine kinase family. RuleBase RU004165 HAMAP-Rule MF_00124

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding9 – 168ATP By similarity HAMAP-Rule MF_00124
Nucleotide binding87 – 904ATP By similarity HAMAP-Rule MF_00124

Sites

Active site881Proton acceptor By similarity HAMAP-Rule MF_00124
Metal binding1451Zinc By similarity HAMAP-Rule MF_00124
Metal binding1471Zinc By similarity HAMAP-Rule MF_00124
Metal binding1821Zinc By similarity HAMAP-Rule MF_00124
Metal binding1851Zinc By similarity HAMAP-Rule MF_00124

Sequences

Sequence LengthMass (Da)Tools
Q1CJ58 [UniParc].

Last modified July 11, 2006. Version 1.
Checksum: F3333069CBFA5958

FASTA19621,897
        10         20         30         40         50         60 
MAQLYFYYSA MNAGKSTALL QSSYNYQERG MRTLVFTAEI DNRFGVGTVS SRIGLSSQAQ 

        70         80         90        100        110        120 
LYNSGTSLLS IIAAEHQDTP IHCILLDECQ FLTKEQVQEL CQVVDELHLP VLCYGLRTDF 

       130        140        150        160        170        180 
LGELFPGSKY LLAWADKLVE LKTICHCGRK ANMVLRLDEQ GRAVHNGEQV VIGGNESYVS 

       190 
VCRRHYKEAI KAACCS 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen."
Chain P.S., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L.
J. Bacteriol. 188:4453-4463(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nepal516 EMBL ABG17972.1.
[2]"Complete sequence of chromosome of Yersinia pestis Nepal516."
US DOE Joint Genome Institute
Barry K., Lucas S., Lapidus A., Copeland A., Detter J.C., Glavina del Rio T., Hammon N., Dalin E., Tice H., Pitluck S., Chain P., Hu P., Malfatti S.A., Radnedge L., Vergez L.M., Larimer F., Land M., Hauser L. expand/collapse author list , Worsham P., Chu M.C., Andersen G., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Nepal516 EMBL ABG17972.1.
[3]"Yersinia pestis Nepal516A whole genome shotgun sequencing project."
Plunkett G.III., Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Tapia R., Green L.D., Rogers Y.C., Detter J.C., Bruce D.C., Brettin T.S.
Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nepal516 EMBL EEO77093.1.
[4]"Yersinia pestis Nepal516A whole genome shotgun sequencing project."
Plunkett G. III, Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Tapia R., Green L.D., Rogers Y.C., Detter J.C., Bruce D.C., Brettin T.S.
Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nepal516.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000305 Genomic DNA. Translation: ABG17972.1.
ACNQ01000009 Genomic DNA. Translation: EEO77093.1.
RefSeqYP_647572.1. NC_008149.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING377628.YPN_1643.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG17972; ABG17972; YPN_1643.
EEO77093; EEO77093; YP516_1828.
GeneID4124878.
KEGGypn:YPN_1643.
PATRIC18602700. VBIYerPes46733_2010.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1435.
HOGENOMHOG000076391.
KOK00857.
OMAELKTVCH.
OrthoDBEOG69D3J2.

Enzyme and pathway databases

BioCycYPES377628:GIXK-1702-MONOMER.

Family and domain databases

HAMAPMF_00124. Thymidine_kinase.
InterProIPR027417. P-loop_NTPase.
IPR001267. Thymidine_kinase.
IPR020633. Thymidine_kinase_CS.
IPR020634. Thymidine_kinase_subgr.
[Graphical view]
PANTHERPTHR11441. PTHR11441. 1 hit.
PfamPF00265. TK. 1 hit.
[Graphical view]
PIRSFPIRSF035805. TK_cell. 1 hit.
SUPFAMSSF52540. SSF52540. 1 hit.
PROSITEPS00603. TK_CELLULAR_TYPE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ1CJ58_YERPN
AccessionPrimary (citable) accession number: Q1CJ58
Entry history
Integrated into UniProtKB/TrEMBL: July 11, 2006
Last sequence update: July 11, 2006
Last modified: July 9, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)