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Protein

HTH-type transcriptional activator RhaR

Gene

rhaR

Organism
Yersinia pestis bv. Antiqua (strain Nepal516)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Activates expression of the rhaSR operon in response to L-rhamnose.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi195 – 214H-T-H motifUniRule annotationAdd BLAST20
DNA bindingi244 – 267H-T-H motifUniRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processRhamnose metabolism, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional activator RhaRUniRule annotation
Alternative name(s):
L-rhamnose operon transcriptional activator RhaRUniRule annotation
Gene namesi
Name:rhaRUniRule annotation
Ordered Locus Names:YPN_3337
ORF Names:YP516_3793
OrganismiYersinia pestis bv. Antiqua (strain Nepal516)
Taxonomic identifieri377628 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeYersinia
Proteomesi

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002927771 – 290HTH-type transcriptional activator RhaRAdd BLAST290

Interactioni

Subunit structurei

Binds DNA as a dimer.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei246Interaction with sigma-70UniRule annotation1

Structurei

3D structure databases

ProteinModelPortaliQ1CEB6
SMRiQ1CEB6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000290513
KOiK02854
OMAiNREVGMT

Family and domain databases

Gene3Di2.60.120.10, 1 hit
HAMAPiMF_01533 HTH_type_RhaR, 1 hit
InterProiView protein in InterPro
IPR003313 AraC-bd
IPR009057 Homeobox-like_sf
IPR018060 HTH_AraC
IPR018062 HTH_AraC-typ_CS
IPR014710 RmlC-like_jellyroll
IPR011051 RmlC_Cupin_sf
IPR023699 Tscrpt_act_RhaR
IPR020449 Tscrpt_reg_HTH_AraC-type
PfamiView protein in Pfam
PF02311 AraC_binding, 1 hit
PF12833 HTH_18, 1 hit
PRINTSiPR00032 HTHARAC
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
SSF51182 SSF51182, 1 hit
PROSITEiView protein in PROSITE
PS00041 HTH_ARAC_FAMILY_1, 1 hit
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q1CEB6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRAPLLLESR DYLLSEQMPV AVTNRYPQET FVEHTHQFCE IVIVWRGNGL
60 70 80 90 100
HVLNDHPYRI TCGDVFYIQA ADHHSYESVH DLVLDNIIYC PERLHLNAQW
110 120 130 140 150
HKLLPPLGPE QNQGYWRLTT QGMAQARPII QQLAQESRKT DSWSIQLTEV
160 170 180 190 200
LLLQLAIVLK RHRYRAEQAH LLPDGEQLDL IMSALQQSLG AYFDMADFCH
210 220 230 240 250
KNQLVERSLK QLFRQQTGMS ISHYLRQIRL CHAKCLLRGS EHRISDIAAR
260 270 280 290
CGFEDSNYFS AVFTREAGMT PRDYRQRFIR SPVLPAKNEP
Length:290
Mass (Da):33,775
Last modified:July 11, 2006 - v1
Checksum:i28446572FBE3F975
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000305 Genomic DNA Translation: ABG19664.1
ACNQ01000017 Genomic DNA Translation: EEO75854.1
RefSeqiWP_002209110.1, NZ_ACNQ01000017.1

Genome annotation databases

EnsemblBacteriaiABG19664; ABG19664; YPN_3337
EEO75854; EEO75854; YP516_3793
KEGGiypn:YPN_3337

Entry informationi

Entry nameiRHAR_YERPN
AccessioniPrimary (citable) accession number: Q1CEB6
Secondary accession number(s): C4GY54
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: July 11, 2006
Last modified: March 28, 2018
This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

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