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Q1CD79

- Q1CD79_YERPN

UniProt

Q1CD79 - Q1CD79_YERPN

Protein
Submitted name:

Alpha-amylase protein

Gene

malS

Organism
Yersinia pestis bv. Antiqua (strain Nepal516)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 1 (11 Jul 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Keywords - Molecular functioni

    GlycosidaseImported, Hydrolase

    Enzyme and pathway databases

    BioCyciYPES377628:GIXK-3825-MONOMER.

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha-amylase proteinImported (EC:3.2.1.1Imported)
    Gene namesi
    Name:malSImported
    Ordered Locus Names:YPN_3724Imported
    ORF Names:YP516_4234Imported
    OrganismiYersinia pestis bv. Antiqua (strain Nepal516)Imported
    Taxonomic identifieri377628 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
    ProteomesiUP000008936: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 1919 PotentialImportedAdd
    BLAST
    Chaini20 – 687668 PotentialImportedPRO_5000115658Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi377628.YPN_3724.

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000273912.
    KOiK01176.
    OMAiGQNWHSF.
    OrthoDBiEOG65QWH3.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q1CD79-1 [UniParc]FASTAAdd to Basket

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    MKRLTLPLLL VLSPAAMANW SLQHFPAFTE QDSGIFLSSS SLTKGEYPLK    50
    FYQDKQCWQP TGPVKLNQML SLQPCQENIA IPWRLFRDGQ YQARIDTRSG 100
    TPTLTLSVTA PVAEAVQVVT HVCQRWDGNP VTVDVSKTFA EGEIVRDFYS 150
    GQTATVSLGK ITLRPAPESG GLLLLESAQT QQAAPFSWQN ATVYFALTDR 200
    FNNGNPANDH SYGRHGDGMQ EIGTFHGGDL AGLTEKLDYL QQLGVNALWI 250
    SSPLEQIHGW VGGGTKGDFP HYAYHGYYGL DWTRLDANMG TEQDLRTLVE 300
    QAHKRGIRIL FDVVMNHVGY ATLADMQNDQ FGALYLQGDQ QEKTLGKRWS 350
    DWTPGSGQTW HSFNDYINFS DKTAWDNWWG KKWIRTDIGD YDTPGYDDLT 400
    MSLAFLPDIK TESTQPSGLP VFYRNKPDTA AQEIAGATPR DYMTHWLSQW 450
    VRDYGIDGFR VDTAKHVEKP AWQQLKQQSI AALAEWKAAH PEQALDNLPF 500
    WMTGEAWGHG VMKSDYYQNG FDAMINFDFQ DQANQALACF SSIESTYNQM 550
    AEKLQNFNVL SYLSSHDTRL FFKDDAQQSL AKQQRAGSLL LLAPGAVQIF 600
    YGDESGRKFG PTGSDPLQGT RSDMNWSELS GEKGALLAHW QKVSQFRARH 650
    PAIGAGVQQS QQTANYYAFS RQHQGDKVLV VWVGDKN 687
    Length:687
    Mass (Da):77,102
    Last modified:July 11, 2006 - v1
    Checksum:iEF88234CF29F6036
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000305 Genomic DNA. Translation: ABG20051.1.
    ACNQ01000019 Genomic DNA. Translation: EEO74631.1.
    RefSeqiYP_649651.1. NC_008149.1.

    Genome annotation databases

    EnsemblBacteriaiABG20051; ABG20051; YPN_3724.
    EEO74631; EEO74631; YP516_4234.
    GeneIDi4126141.
    KEGGiypn:YPN_3724.
    PATRICi18607557. VBIYerPes46733_4406.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000305 Genomic DNA. Translation: ABG20051.1 .
    ACNQ01000019 Genomic DNA. Translation: EEO74631.1 .
    RefSeqi YP_649651.1. NC_008149.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 377628.YPN_3724.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABG20051 ; ABG20051 ; YPN_3724 .
    EEO74631 ; EEO74631 ; YP516_4234 .
    GeneIDi 4126141.
    KEGGi ypn:YPN_3724.
    PATRICi 18607557. VBIYerPes46733_4406.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000273912.
    KOi K01176.
    OMAi GQNWHSF.
    OrthoDBi EOG65QWH3.

    Enzyme and pathway databases

    BioCyci YPES377628:GIXK-3825-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen."
      Chain P.S.G., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L.
      J. Bacteriol. 188:4453-4463(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Nepal516Imported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Nepal516Imported.
    3. "Yersinia pestis Nepal516A whole genome shotgun sequencing project."
      Plunkett G.III., Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Tapia R., Green L.D., Rogers Y.C., Detter J.C., Bruce D.C., Brettin T.S.
      Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Nepal516Imported.

    Entry informationi

    Entry nameiQ1CD79_YERPN
    AccessioniPrimary (citable) accession number: Q1CD79
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 11, 2006
    Last sequence update: July 11, 2006
    Last modified: October 1, 2014
    This is version 64 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3