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Q1CD79

- Q1CD79_YERPN

UniProt

Q1CD79 - Q1CD79_YERPN

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Protein
Submitted name: Alpha-amylase protein
Gene
malS, YPN_3724, YP516_4234
Organism
Yersinia pestis bv. Antiqua (strain Nepal516)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciYPES377628:GIXK-3825-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylase proteinImported (EC:3.2.1.1Imported)
Gene namesi
Name:malSImported
Ordered Locus Names:YPN_3724Imported
ORF Names:YP516_4234Imported
OrganismiYersinia pestis bv. Antiqua (strain Nepal516)Imported
Taxonomic identifieri377628 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
ProteomesiUP000008936: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919 PredictedImported
Add
BLAST
Chaini20 – 687668 PredictedImported
PRO_5000115658Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi377628.YPN_3724.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiGQNWHSF.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q1CD79-1 [UniParc]FASTAAdd to Basket

« Hide

MKRLTLPLLL VLSPAAMANW SLQHFPAFTE QDSGIFLSSS SLTKGEYPLK    50
FYQDKQCWQP TGPVKLNQML SLQPCQENIA IPWRLFRDGQ YQARIDTRSG 100
TPTLTLSVTA PVAEAVQVVT HVCQRWDGNP VTVDVSKTFA EGEIVRDFYS 150
GQTATVSLGK ITLRPAPESG GLLLLESAQT QQAAPFSWQN ATVYFALTDR 200
FNNGNPANDH SYGRHGDGMQ EIGTFHGGDL AGLTEKLDYL QQLGVNALWI 250
SSPLEQIHGW VGGGTKGDFP HYAYHGYYGL DWTRLDANMG TEQDLRTLVE 300
QAHKRGIRIL FDVVMNHVGY ATLADMQNDQ FGALYLQGDQ QEKTLGKRWS 350
DWTPGSGQTW HSFNDYINFS DKTAWDNWWG KKWIRTDIGD YDTPGYDDLT 400
MSLAFLPDIK TESTQPSGLP VFYRNKPDTA AQEIAGATPR DYMTHWLSQW 450
VRDYGIDGFR VDTAKHVEKP AWQQLKQQSI AALAEWKAAH PEQALDNLPF 500
WMTGEAWGHG VMKSDYYQNG FDAMINFDFQ DQANQALACF SSIESTYNQM 550
AEKLQNFNVL SYLSSHDTRL FFKDDAQQSL AKQQRAGSLL LLAPGAVQIF 600
YGDESGRKFG PTGSDPLQGT RSDMNWSELS GEKGALLAHW QKVSQFRARH 650
PAIGAGVQQS QQTANYYAFS RQHQGDKVLV VWVGDKN 687
Length:687
Mass (Da):77,102
Last modified:July 11, 2006 - v1
Checksum:iEF88234CF29F6036
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000305 Genomic DNA. Translation: ABG20051.1.
ACNQ01000019 Genomic DNA. Translation: EEO74631.1.
RefSeqiYP_649651.1. NC_008149.1.

Genome annotation databases

EnsemblBacteriaiABG20051; ABG20051; YPN_3724.
EEO74631; EEO74631; YP516_4234.
GeneIDi4126141.
KEGGiypn:YPN_3724.
PATRICi18607557. VBIYerPes46733_4406.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000305 Genomic DNA. Translation: ABG20051.1 .
ACNQ01000019 Genomic DNA. Translation: EEO74631.1 .
RefSeqi YP_649651.1. NC_008149.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 377628.YPN_3724.

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABG20051 ; ABG20051 ; YPN_3724 .
EEO74631 ; EEO74631 ; YP516_4234 .
GeneIDi 4126141.
KEGGi ypn:YPN_3724.
PATRICi 18607557. VBIYerPes46733_4406.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000273912.
KOi K01176.
OMAi GQNWHSF.
OrthoDBi EOG65QWH3.

Enzyme and pathway databases

BioCyci YPES377628:GIXK-3825-MONOMER.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
SMARTi SM00642. Aamy. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 2 hits.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen."
    Chain P.S., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L.
    J. Bacteriol. 188:4453-4463(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nepal516Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Nepal516Imported.
  3. "Yersinia pestis Nepal516A whole genome shotgun sequencing project."
    Plunkett G.III., Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Tapia R., Green L.D., Rogers Y.C., Detter J.C., Bruce D.C., Brettin T.S.
    Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nepal516Imported.
  4. "Yersinia pestis Nepal516A whole genome shotgun sequencing project."
    Plunkett G. III, Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Tapia R., Green L.D., Rogers Y.C., Detter J.C., Bruce D.C., Brettin T.S.
    Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nepal516.

Entry informationi

Entry nameiQ1CD79_YERPN
AccessioniPrimary (citable) accession number: Q1CD79
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2006
Last sequence update: July 11, 2006
Last modified: September 3, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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