Q1CCU6 (RL23_YERPN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23

Gene names

Name:	rplW
Ordered Locus Names:	YPN_3857
ORF Names:	YP516_4380

Organism

Yersinia pestis bv. Antiqua (strain Nepal516) [Complete proteome] [HAMAP]

Taxonomic identifier

377628 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia › Yersinia pestis

Protein attributes

Sequence length	100 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity.
Sequence similarities	Belongs to the ribosomal protein L23P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 100	100	50S ribosomal protein L23 HAMAP-Rule MF_01369		PRO_0000272883

Sequences

	Sequence		Length	Mass (Da)
	Q1CCU6 [UniParc]. Last modified July 11, 2006. Version 1. Checksum: 40BA0C4B4E36AE5B	FASTA	100	11,230
	10 20 30 40 50 60 MIREERLLKV LRSPHVSEKA SAAMEKNNTI VLKVAKDATK AEIKAAVQKL FEVEVEDVNT 70 80 90 100 LLVKGKSKRH GQRVGRRSDW KKAYVTLKEG QNLDFIGGAE

References

[1]

"Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen." Chain P.S.G., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L. J. Bacteriol. 188:4453-4463(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nepal516.

[2]

"Yersinia pestis Nepal516A whole genome shotgun sequencing project." Plunkett G. III, Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Tapia R., Green L.D., Rogers Y.C., Detter J.C., Bruce D.C., Brettin T.S. Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nepal516.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000305 Genomic DNA. Translation: ABG20184.1. ACNQ01000019 Genomic DNA. Translation: EEO74772.1.
RefSeq	YP_649784.1. NC_008149.1.
3D structure databases
ProteinModelPortal	Q1CCU6.
SMR	Q1CCU6. Positions 1-99.
ModBase	Search...
Protein-protein interaction databases
STRING	377628.YPN_3857.
Proteomic databases
PRIDE	Q1CCU6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG20184; ABG20184; YPN_3857. EEO74772; EEO74772; YP516_4380.
GeneID	4122685.
KEGG	ypn:YPN_3857.
PATRIC	18607843. VBIYerPes46733_4549.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0089.
HOGENOM	HOG000231364.
KO	K02892.
OMA	HRAAKPD.
ProtClustDB	PRK05738.
Enzyme and pathway databases
BioCyc	YPES377628:GIXK-3958-MONOMER.
Family and domain databases
Gene3D	3.30.70.330. 1 hit.
HAMAP	MF_01369_B. Ribosomal_L23_B.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR001014. Ribosomal_L23/L25_CS. IPR013025. Ribosomal_L25/23. [Graphical view]
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
PROSITE	PS00050. RIBOSOMAL_L23. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL23_YERPN

Accession

Primary (citable) accession number: Q1CCU6
Secondary accession number(s): D1Q2L9

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 23, 2007
Last sequence update:	July 11, 2006
Last modified:	May 29, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program