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Q1CCU6 (RL23_YERPN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L23
Gene names
Name:rplW
Ordered Locus Names:YPN_3857
ORF Names:YP516_4380
OrganismYersinia pestis bv. Antiqua (strain Nepal516) [Complete proteome] [HAMAP]
Taxonomic identifier377628 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia

Protein attributes

Sequence length100 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP-Rule MF_01369

Subunit structure

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity.

Sequence similarities

Belongs to the ribosomal protein L23P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionnucleotide binding

Inferred from electronic annotation. Source: InterPro

rRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 10010050S ribosomal protein L23 HAMAP-Rule MF_01369
PRO_0000272883

Sequences

Sequence LengthMass (Da)Tools
Q1CCU6 [UniParc].

Last modified July 11, 2006. Version 1.
Checksum: 40BA0C4B4E36AE5B

FASTA10011,230
        10         20         30         40         50         60 
MIREERLLKV LRSPHVSEKA SAAMEKNNTI VLKVAKDATK AEIKAAVQKL FEVEVEDVNT 

        70         80         90        100 
LLVKGKSKRH GQRVGRRSDW KKAYVTLKEG QNLDFIGGAE 

« Hide

References

[1]"Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen."
Chain P.S.G., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L.
J. Bacteriol. 188:4453-4463(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nepal516.
[2]"Yersinia pestis Nepal516A whole genome shotgun sequencing project."
Plunkett G. III, Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Tapia R., Green L.D., Rogers Y.C., Detter J.C., Bruce D.C., Brettin T.S.
Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nepal516.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000305 Genomic DNA. Translation: ABG20184.1.
ACNQ01000019 Genomic DNA. Translation: EEO74772.1.
RefSeqYP_649784.1. NC_008149.1.

3D structure databases

ProteinModelPortalQ1CCU6.
SMRQ1CCU6. Positions 1-99.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING377628.YPN_3857.

Proteomic databases

PRIDEQ1CCU6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABG20184; ABG20184; YPN_3857.
EEO74772; EEO74772; YP516_4380.
GeneID4122685.
KEGGypn:YPN_3857.
PATRIC18607843. VBIYerPes46733_4549.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0089.
HOGENOMHOG000231364.
KOK02892.
OMAKGIVGRQ.
OrthoDBEOG6HTP4P.
ProtClustDBPRK05738.

Enzyme and pathway databases

BioCycYPES377628:GIXK-3958-MONOMER.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
HAMAPMF_01369_B. Ribosomal_L23_B.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMSSF54189. SSF54189. 1 hit.
PROSITEPS00050. RIBOSOMAL_L23. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL23_YERPN
AccessionPrimary (citable) accession number: Q1CCU6
Secondary accession number(s): D1Q2L9
Entry history
Integrated into UniProtKB/Swiss-Prot: January 23, 2007
Last sequence update: July 11, 2006
Last modified: February 19, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries