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Q1CCU6

- RL23_YERPN

UniProt

Q1CCU6 - RL23_YERPN

Protein

50S ribosomal protein L23

Gene

rplW

Organism
Yersinia pestis bv. Antiqua (strain Nepal516)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciYPES377628:GIXK-3958-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L23UniRule annotation
    Gene namesi
    Name:rplWUniRule annotation
    Ordered Locus Names:YPN_3857
    ORF Names:YP516_4380
    OrganismiYersinia pestis bv. Antiqua (strain Nepal516)
    Taxonomic identifieri377628 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeYersinia
    ProteomesiUP000008936: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 10010050S ribosomal protein L23PRO_0000272883Add
    BLAST

    Proteomic databases

    PRIDEiQ1CCU6.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

    Protein-protein interaction databases

    STRINGi377628.YPN_3857.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1CCU6.
    SMRiQ1CCU6. Positions 1-99.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L23P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0089.
    HOGENOMiHOG000231364.
    KOiK02892.
    OMAiFGRRSDW.
    OrthoDBiEOG6HTP4P.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    HAMAPiMF_01369_B. Ribosomal_L23_B.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001014. Ribosomal_L23/L25_CS.
    IPR013025. Ribosomal_L25/23.
    [Graphical view]
    PfamiPF00276. Ribosomal_L23. 1 hit.
    [Graphical view]
    SUPFAMiSSF54189. SSF54189. 1 hit.
    PROSITEiPS00050. RIBOSOMAL_L23. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1CCU6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIREERLLKV LRSPHVSEKA SAAMEKNNTI VLKVAKDATK AEIKAAVQKL    50
    FEVEVEDVNT LLVKGKSKRH GQRVGRRSDW KKAYVTLKEG QNLDFIGGAE 100
    Length:100
    Mass (Da):11,230
    Last modified:July 11, 2006 - v1
    Checksum:i40BA0C4B4E36AE5B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000305 Genomic DNA. Translation: ABG20184.1.
    ACNQ01000019 Genomic DNA. Translation: EEO74772.1.
    RefSeqiYP_649784.1. NC_008149.1.

    Genome annotation databases

    EnsemblBacteriaiABG20184; ABG20184; YPN_3857.
    EEO74772; EEO74772; YP516_4380.
    GeneIDi4122685.
    KEGGiypn:YPN_3857.
    PATRICi18607843. VBIYerPes46733_4549.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000305 Genomic DNA. Translation: ABG20184.1 .
    ACNQ01000019 Genomic DNA. Translation: EEO74772.1 .
    RefSeqi YP_649784.1. NC_008149.1.

    3D structure databases

    ProteinModelPortali Q1CCU6.
    SMRi Q1CCU6. Positions 1-99.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 377628.YPN_3857.

    Proteomic databases

    PRIDEi Q1CCU6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABG20184 ; ABG20184 ; YPN_3857 .
    EEO74772 ; EEO74772 ; YP516_4380 .
    GeneIDi 4122685.
    KEGGi ypn:YPN_3857.
    PATRICi 18607843. VBIYerPes46733_4549.

    Phylogenomic databases

    eggNOGi COG0089.
    HOGENOMi HOG000231364.
    KOi K02892.
    OMAi FGRRSDW.
    OrthoDBi EOG6HTP4P.

    Enzyme and pathway databases

    BioCyci YPES377628:GIXK-3958-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    HAMAPi MF_01369_B. Ribosomal_L23_B.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR001014. Ribosomal_L23/L25_CS.
    IPR013025. Ribosomal_L25/23.
    [Graphical view ]
    Pfami PF00276. Ribosomal_L23. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54189. SSF54189. 1 hit.
    PROSITEi PS00050. RIBOSOMAL_L23. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen."
      Chain P.S.G., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L.
      J. Bacteriol. 188:4453-4463(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Nepal516.
    2. "Yersinia pestis Nepal516A whole genome shotgun sequencing project."
      Plunkett G. III, Anderson B.D., Baumler D.J., Burland V., Cabot E.L., Glasner J.D., Mau B., Neeno-Eckwall E., Perna N.T., Munk A.C., Tapia R., Green L.D., Rogers Y.C., Detter J.C., Bruce D.C., Brettin T.S.
      Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Nepal516.

    Entry informationi

    Entry nameiRL23_YERPN
    AccessioniPrimary (citable) accession number: Q1CCU6
    Secondary accession number(s): D1Q2L9
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 23, 2007
    Last sequence update: July 11, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3