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Q1C7J2 (ARAB_YERPA) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribulokinase
EC=2.7.1.16
Gene names
Name:araB
Ordered Locus Names:YPA_1614
OrganismYersinia pestis bv. Antiqua (strain Antiqua) [Complete proteome] [HAMAP]
Taxonomic identifier360102 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia

Protein attributes

Sequence length567 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520

Sequence similarities

Belongs to the ribulokinase family.

Ontologies

Keywords
   Biological processArabinose catabolism
Carbohydrate metabolism
   LigandATP-binding
Nucleotide-binding
   Molecular functionKinase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processL-arabinose catabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

ribulokinase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 567567Ribulokinase HAMAP MF_00520
PRO_0000263410

Sequences

Sequence LengthMass (Da)Tools
Q1C7J2 [UniParc].

Last modified July 11, 2006. Version 1.
Checksum: A614A0434E334B5D

FASTA56762,205
        10         20         30         40         50         60 
MTGNVISADG AIALGLDFGS DSVRVLAVDC QHGTEIDTEV VYYPRWKKGL YCQAAQNQFR 

        70         80         90        100        110        120 
HHPLDYIEAM EQAIRQMVKR LSEEQRQHIV GIGVDSTGST PAPIDEQGQV LALRPDFADN 

       130        140        150        160        170        180 
PNAMFVLWKD HTAIEEAEEI NRLCRSGEFA DYSRYIGGVY SSEWFWAKIL HVTRADVAVR 

       190        200        210        220        230        240 
EAAVSWIELC DWVPALLSGT TAPQDIQRGR CSAGHKSLWH PSWGGLPPRA FLAALDTSLV 

       250        260        270        280        290        300 
NDLDYPMFTD TYTAERPVGQ ITAEWAERLG LPTTVILSGG AFDCHMGAVG AGAQPYTLVK 

       310        320        330        340        350        360 
VIGTSTCDIL IADDQRVGDR AIAGICGQVE GSVLPGWIGM EAGQSAFGDM YAWFSNLLSW 

       370        380        390        400        410        420 
PLHQAALTQP EWQPQLKQIE SNLLASLTRA WAQNPSLDHL PVVLDWFNGR RTPNANQRLK 

       430        440        450        460        470        480 
GVITDLNLGT DAPTLFGGFI AATAFGARAI MECFEQQDIP IDNVLALGGI ARKSPVIMQV 

       490        500        510        520        530        540 
CADVMNRPLQ IVASDQCCAL GAAIFAAVAA GAHDDVPTAQ RHMACNIERT LIPDPVQVVR 

       550        560 
YQQLYQRYQQ WCHTAEPHYA PVTKVIH

« Hide

References

[1]"Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen."
Chain P.S.G., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L.
J. Bacteriol. 188:4453-4463(2006) [PubMed: 16740952] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Antiqua.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000308 Genomic DNA. Translation: ABG13580.1.
RefSeqYP_651525.1. NC_008150.1.

3D structure databases

ProteinModelPortalQ1C7J2.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ1C7J2.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4120250.
GenomeReviewsGene locus YPA_1614 in contig CP000308_GR.
KEGGypa:YPA_1614.
PATRIC18582545. VBIYerPes1796_2089.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1069.
HOGENOMHBG312681.
OMANGRRTPD.
ProtClustDBPRK04123.

Enzyme and pathway databases

BioCycYPES360102:YPA_1614-MONOMER.

Family and domain databases

HAMAPMF_00520. Ribulokinase.
[Tree]
InterProIPR000577. Carb_kinase_FGGY.
IPR018485. Carb_kinase_FGGY_C.
IPR018484. Carb_kinase_FGGY_N.
IPR005929. L_ribulokin.
[Graphical view]
KOK00853.
PANTHERPTHR10196. FGGY_kin. 1 hit.
PfamPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR01234. L-ribulokinase. 1 hit.
ProtoNetSearch...

Entry information

Entry nameARAB_YERPA
AccessionPrimary (citable) accession number: Q1C7J2
Entry history
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: July 11, 2006
Last modified: January 25, 2012
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

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