Q1C188 (Q1C188_YERPA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Periplasmic pectate lyase EMBL ABG15784.1
EC=4.2.2.2 EMBL ABG15784.1

Gene names

Ordered Locus Names:

YPA_3822

Organism

Yersinia pestis bv. Antiqua (strain Antiqua) [Complete proteome] [HAMAP] EMBL ABG15784.1

Taxonomic identifier

360102 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Yersinia

Protein attributes

Sequence length	572 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABG15784.1
Molecular function	Lyase EMBL ABG15784.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	pectin catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	pectate lyase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 24	24	Potential EMBL ABG15784.1
	Chain	25 – 572	548	Potential EMBL ABG15784.1		PRO_5000116327

Sequences

	Sequence		Length	Mass (Da)
	Q1C188 [UniParc]. Last modified July 11, 2006. Version 1. Checksum: A01ADC208C2B5FB3	FASTA	572	64,115
	10 20 30 40 50 60 MKKRALLLSM SVLAMLYIPA GQAAEIDRLT VVKQYVDNVL NKASDTYHGD KPSPLLADGV 70 80 90 100 110 120 DPRTGQQMEW IFPDGRRAVL SNFSAQQNLM RVMSGLSELS GDPQYQKRAE DIVRYHFQNY 130 140 150 160 170 180 QDNSGLLYWG GHRFVDLKTL QPEGPSEKEK VHELKNAYPY YDLMFSVDSD ATTRFIRGFW 190 200 210 220 230 240 NAHVYDWRIL ETSRHGEYGK PMGALWESTF EQQPPFFATK GLSFLNAGND LIYSASLLYK 250 260 270 280 290 300 YQQDQGALVW AKRLADQYVL PRDAKTGLGV YQFTQALKRE EPTDDADTHS KFGDRAQRQF 310 320 330 340 350 360 GPEFGPTALE GNMMLKGRTS TLYSENALMQ LQLGKDLGGQ GDDLLKWTVD GLKAFAKYGY 370 380 390 400 410 420 NEQDNTFRPM IANGQDLSNY TLPRDGYYGK KGSVLKPYKA GNEFLISYAR AYAVDNDPLL 430 440 450 460 470 480 WKVARGIASD QGLGDIGSAP GKEMKVKLDT TNSDPYALFA LLDLYNASQV AEYRSLAEKV 490 500 510 520 530 540 ADNIIKTRYI DGFFMASPDR QYADVDAIEP YALLALEASL RNKPQAVAPF LNGAGFTEGA 550 560 570 YLMADGSARI STRDNELFLL NVGETLQPNG RK

References

[1]

"Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen." Chain P.S.G., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., Andersen G.L. J. Bacteriol. 188:4453-4463(2006) [PubMed: 16740952] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000308 Genomic DNA. Translation: ABG15784.1.
RefSeq	YP_653729.1. NC_008150.1.
3D structure databases
ProteinModelPortal	Q1C188.
SMR	Q1C188. Positions 28-562.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1C188.
Protein family/group databases
CAZy	PL2. Polysaccharide Lyase Family 2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4120946.
GenomeReviews	Gene locus YPA_3822 in contig CP000308_GR.
KEGG	ypa:YPA_3822.
PATRIC	18587703. VBIYerPes1796_4629.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG41513.
HOGENOM	HBG472751.
OMA	RPMLANG.
ProtClustDB	CLSK888942.
Enzyme and pathway databases
BioCyc	YPES360102:YPA_3822-MONOMER.
Family and domain databases
InterPro	IPR010702. Pectate_lyase_2. [Graphical view]
KO	K01728.
Pfam	PF06917. Pectate_lyase_2. 1 hit. [Graphical view]
PIRSF	PIRSF001432. Pect_lyase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q1C188_YERPA

Accession

Primary (citable) accession number: Q1C188

Entry history

Integrated into UniProtKB/TrEMBL:	July 11, 2006
Last sequence update:	July 11, 2006
Last modified:	December 14, 2011
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)