Reviewed,
UniProtKB/Swiss-Prot Q1BY09 (DADA_BURCA)
Last modified
January 19, 2010.
Version 29.
History...
Clusters with 100%,
90%,
50% identity |
Documents (2) |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin
| Protein names | Recommended name: D-amino acid dehydrogenase small subunit EC=1.4.99.1 | ||||
| Gene names |
| ||||
| Organism | Burkholderia cenocepacia (strain AU 1054) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 331271 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › Burkholderia cepacia complex |
Protein attributes
| Sequence length | 428 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Function | Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202 |
| Catalytic activity | A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202 |
| Cofactor | FAD By similarity. HAMAP MF_01202 |
| Pathway | Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1. HAMAP MF_01202 |
| Subunit structure | Heterodimer of a small and a large subunit By similarity. HAMAP MF_01202 |
| Sequence similarities | Belongs to the dadA oxidoreductase family. |
Ontologies
| Keywords | |
|---|---|
| Ligand | FAD Flavoprotein |
| Molecular function | Oxidoreductase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | alanine catabolic process Inferred from electronic annotation. Source: HAMAP oxidation reductionInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Molecule processing | ||||||||
|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 428 | 428 | D-amino acid dehydrogenase small subunit HAMAP MF_01202 | PRO_1000066072 | ||||
Regions | ||||||||
| Nucleotide binding | 3 – 17 | 15 | FAD Potential | |||||
Sequences
| ||||||||||||||||||
References
| [1] | "Complete sequence of chromosome 1 of Burkholderia cenocepacia AU 1054." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M. Richardson P.Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000378 Genomic DNA. Translation: ABF75496.1. |
| RefSeq | YP_620469.1. |
3D structure databases | |
| SMR | Q1BY09. Positions 2-418. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q1BY09. |
Genome annotation databases | |
| GeneID | 4092203. |
| GenomeReviews | Gene locus Bcen_0585 in contig CP000378_GR. |
| KEGG | bcn:Bcen_0585. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG0665. |
| HOGENOM | HBG729204. |
| OMA | MFQKHAP. |
Family and domain databases | |
| HAMAP | MF_01202. DadA. [Tree] |
| InterPro | IPR006076. FAD-dep_OxRdtase. [Graphical view] |
| Pfam | PF01266. DAO. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | DADA_BURCA | ||||||||
| Accession | Primary (citable) accession number: Q1BY09 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||
Relevant documents
| PATHWAY comments Index of metabolic and biosynthesis pathways |
| SIMILARITY comments Index of protein domains and families |

Clusters with


