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Protein
Submitted name:

ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Mmcs_4352

Organism
Mycobacterium sp. (strain MCS)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP164756:GHQ8-4397-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Mmcs_4352Imported
OrganismiMycobacterium sp. (strain MCS)Imported
Taxonomic identifieri164756 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000001972 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi164756.Mmcs_4352.

Structurei

3D structure databases

ProteinModelPortaliQ1B3S7.
SMRiQ1B3S7. Positions 7-285, 454-758.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1B3S7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVDHFGRVRL TNPDKVLYPA TGTTKAEVFE YYVDVAEAMV PHIAGRAVTR
60 70 80 90 100
KRWPNGVGEL EFFEKQLASS APDWLARGTI VHKSGTTTYP IIDTREGLAW
110 120 130 140 150
IAQQAALEVH VPQWRFVGSG GDLTPGPATR IVFDLDPGEG VTFRQLCEVA
160 170 180 190 200
HEVRDLITDI GLTAYPLTSG SKGLHLYVPL KEPISSQGAS VLAKRVAQQL
210 220 230 240 250
EKAMPKQVTA TMTKSLREGK VFLDWSQNNG NKTTIAPYSL RGREHPTVAA
260 270 280 290 300
PRTWEEIEDP DLRHLRFDEV LERIEEFGDL LADLDEYVPV EDRLTKYRSM
310 320 330 340 350
RDPSRTPEPV PPLPPKAGNN DRFVIQEHHA RRLHYDLRLE RDGVLVSWAV
360 370 380 390 400
PKNLPDRPSE NHLAVHTEDH PMEYLTFHGT IPKGEYGGGD MIVWDTGTYE
410 420 430 440 450
TEKFNDHAPD GPAKGGEVII TLHGNRIDGR YALIQTDGKN WLAHRMKDQG
460 470 480 490 500
NPTFEDFAPM LATHGSVEKF TAKQWAFEGK WDGYRLLVDA DHGKLCLKSR
510 520 530 540 550
SGRDVTAEYP QLRALAADLA DHHVVLDGEV VALDDKGVPS FGHMQNRARS
560 570 580 590 600
TRVEFWAFDI LRLDGRWLLK AKYRDRRKLL ETLASGGGLI VQPLLDGDGL
610 620 630 640 650
EALEDARKRR WEGVVAKKWD STYQPGRRSS AWIKDKLWNT QEVVIGGWRE
660 670 680 690 700
GNGGRSSGIG ALVLGIPGPD GLQFVGRVGT GFTEKELGSL KKTLAPLHTY
710 720 730 740 750
ESPFATRLPT QDAKGVTFVR PELVGEVRYS ERTGDGRLRQ PSWRGLRPDK

TPDDVVWE
Length:758
Mass (Da):84,908
Last modified:July 11, 2006 - v1
Checksum:iD6A3F480B86EE82C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000384 Genomic DNA. Translation: ABG10457.1.
RefSeqiYP_641513.1. NC_008146.1.

Genome annotation databases

EnsemblBacteriaiABG10457; ABG10457; Mmcs_4352.
KEGGimmc:Mmcs_4352.
PATRICi18119061. VBIMycSp106721_4457.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000384 Genomic DNA. Translation: ABG10457.1.
RefSeqiYP_641513.1. NC_008146.1.

3D structure databases

ProteinModelPortaliQ1B3S7.
SMRiQ1B3S7. Positions 7-285, 454-758.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi164756.Mmcs_4352.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG10457; ABG10457; Mmcs_4352.
KEGGimmc:Mmcs_4352.
PATRICi18119061. VBIMycSp106721_4457.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciMSP164756:GHQ8-4397-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MCSImported.

Entry informationi

Entry nameiQ1B3S7_MYCSS
AccessioniPrimary (citable) accession number: Q1B3S7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2006
Last sequence update: July 11, 2006
Last modified: April 29, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.