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Q1B3S7

- Q1B3S7_MYCSS

UniProt

Q1B3S7 - Q1B3S7_MYCSS

Protein
Submitted name:

ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module

Gene

Mmcs_4352

Organism
Mycobacterium sp. (strain MCS)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (11 Jul 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciMSP164756:GHQ8-4397-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
    Gene namesi
    Ordered Locus Names:Mmcs_4352Imported
    OrganismiMycobacterium sp. (strain MCS)Imported
    Taxonomic identifieri164756 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
    ProteomesiUP000001972: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi164756.Mmcs_4352.

    Structurei

    3D structure databases

    ProteinModelPortaliQ1B3S7.
    SMRiQ1B3S7. Positions 7-285, 454-758.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q1B3S7-1 [UniParc]FASTAAdd to Basket

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    MVDHFGRVRL TNPDKVLYPA TGTTKAEVFE YYVDVAEAMV PHIAGRAVTR    50
    KRWPNGVGEL EFFEKQLASS APDWLARGTI VHKSGTTTYP IIDTREGLAW 100
    IAQQAALEVH VPQWRFVGSG GDLTPGPATR IVFDLDPGEG VTFRQLCEVA 150
    HEVRDLITDI GLTAYPLTSG SKGLHLYVPL KEPISSQGAS VLAKRVAQQL 200
    EKAMPKQVTA TMTKSLREGK VFLDWSQNNG NKTTIAPYSL RGREHPTVAA 250
    PRTWEEIEDP DLRHLRFDEV LERIEEFGDL LADLDEYVPV EDRLTKYRSM 300
    RDPSRTPEPV PPLPPKAGNN DRFVIQEHHA RRLHYDLRLE RDGVLVSWAV 350
    PKNLPDRPSE NHLAVHTEDH PMEYLTFHGT IPKGEYGGGD MIVWDTGTYE 400
    TEKFNDHAPD GPAKGGEVII TLHGNRIDGR YALIQTDGKN WLAHRMKDQG 450
    NPTFEDFAPM LATHGSVEKF TAKQWAFEGK WDGYRLLVDA DHGKLCLKSR 500
    SGRDVTAEYP QLRALAADLA DHHVVLDGEV VALDDKGVPS FGHMQNRARS 550
    TRVEFWAFDI LRLDGRWLLK AKYRDRRKLL ETLASGGGLI VQPLLDGDGL 600
    EALEDARKRR WEGVVAKKWD STYQPGRRSS AWIKDKLWNT QEVVIGGWRE 650
    GNGGRSSGIG ALVLGIPGPD GLQFVGRVGT GFTEKELGSL KKTLAPLHTY 700
    ESPFATRLPT QDAKGVTFVR PELVGEVRYS ERTGDGRLRQ PSWRGLRPDK 750
    TPDDVVWE 758
    Length:758
    Mass (Da):84,908
    Last modified:July 11, 2006 - v1
    Checksum:iD6A3F480B86EE82C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000384 Genomic DNA. Translation: ABG10457.1.
    RefSeqiYP_641513.1. NC_008146.1.

    Genome annotation databases

    EnsemblBacteriaiABG10457; ABG10457; Mmcs_4352.
    GeneIDi4113182.
    KEGGimmc:Mmcs_4352.
    PATRICi18119061. VBIMycSp106721_4457.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000384 Genomic DNA. Translation: ABG10457.1 .
    RefSeqi YP_641513.1. NC_008146.1.

    3D structure databases

    ProteinModelPortali Q1B3S7.
    SMRi Q1B3S7. Positions 7-285, 454-758.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 164756.Mmcs_4352.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABG10457 ; ABG10457 ; Mmcs_4352 .
    GeneIDi 4113182.
    KEGGi mmc:Mmcs_4352.
    PATRICi 18119061. VBIMycSp106721_4457.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci MSP164756:GHQ8-4397-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MCSImported.

    Entry informationi

    Entry nameiQ1B3S7_MYCSS
    AccessioniPrimary (citable) accession number: Q1B3S7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 11, 2006
    Last sequence update: July 11, 2006
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3