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Q1B3S7

- Q1B3S7_MYCSS

UniProt

Q1B3S7 - Q1B3S7_MYCSS

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Protein
Submitted name: ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
Gene
Mmcs_4352
Organism
Mycobacterium sp. (strain MCS)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMSP164756:GHQ8-4397-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigD ligase module / ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase moduleImported
Gene namesi
Ordered Locus Names:Mmcs_4352Imported
OrganismiMycobacterium sp. (strain MCS)Imported
Taxonomic identifieri164756 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacterium
ProteomesiUP000001972: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi164756.Mmcs_4352.

Structurei

3D structure databases

ProteinModelPortaliQ1B3S7.
SMRiQ1B3S7. Positions 7-285, 454-758.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q1B3S7-1 [UniParc]FASTAAdd to Basket

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MVDHFGRVRL TNPDKVLYPA TGTTKAEVFE YYVDVAEAMV PHIAGRAVTR    50
KRWPNGVGEL EFFEKQLASS APDWLARGTI VHKSGTTTYP IIDTREGLAW 100
IAQQAALEVH VPQWRFVGSG GDLTPGPATR IVFDLDPGEG VTFRQLCEVA 150
HEVRDLITDI GLTAYPLTSG SKGLHLYVPL KEPISSQGAS VLAKRVAQQL 200
EKAMPKQVTA TMTKSLREGK VFLDWSQNNG NKTTIAPYSL RGREHPTVAA 250
PRTWEEIEDP DLRHLRFDEV LERIEEFGDL LADLDEYVPV EDRLTKYRSM 300
RDPSRTPEPV PPLPPKAGNN DRFVIQEHHA RRLHYDLRLE RDGVLVSWAV 350
PKNLPDRPSE NHLAVHTEDH PMEYLTFHGT IPKGEYGGGD MIVWDTGTYE 400
TEKFNDHAPD GPAKGGEVII TLHGNRIDGR YALIQTDGKN WLAHRMKDQG 450
NPTFEDFAPM LATHGSVEKF TAKQWAFEGK WDGYRLLVDA DHGKLCLKSR 500
SGRDVTAEYP QLRALAADLA DHHVVLDGEV VALDDKGVPS FGHMQNRARS 550
TRVEFWAFDI LRLDGRWLLK AKYRDRRKLL ETLASGGGLI VQPLLDGDGL 600
EALEDARKRR WEGVVAKKWD STYQPGRRSS AWIKDKLWNT QEVVIGGWRE 650
GNGGRSSGIG ALVLGIPGPD GLQFVGRVGT GFTEKELGSL KKTLAPLHTY 700
ESPFATRLPT QDAKGVTFVR PELVGEVRYS ERTGDGRLRQ PSWRGLRPDK 750
TPDDVVWE 758
Length:758
Mass (Da):84,908
Last modified:July 11, 2006 - v1
Checksum:iD6A3F480B86EE82C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000384 Genomic DNA. Translation: ABG10457.1.
RefSeqiYP_641513.1. NC_008146.1.

Genome annotation databases

EnsemblBacteriaiABG10457; ABG10457; Mmcs_4352.
GeneIDi4113182.
KEGGimmc:Mmcs_4352.
PATRICi18119061. VBIMycSp106721_4457.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000384 Genomic DNA. Translation: ABG10457.1 .
RefSeqi YP_641513.1. NC_008146.1.

3D structure databases

ProteinModelPortali Q1B3S7.
SMRi Q1B3S7. Positions 7-285, 454-758.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 164756.Mmcs_4352.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABG10457 ; ABG10457 ; Mmcs_4352 .
GeneIDi 4113182.
KEGGi mmc:Mmcs_4352.
PATRICi 18119061. VBIMycSp106721_4457.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci MSP164756:GHQ8-4397-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MCSImported.

Entry informationi

Entry nameiQ1B3S7_MYCSS
AccessioniPrimary (citable) accession number: Q1B3S7
Entry historyi
Integrated into UniProtKB/TrEMBL: July 11, 2006
Last sequence update: July 11, 2006
Last modified: May 14, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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