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Q1B046 (Q1B046_RUBXD) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Chromosomal replication initiator protein DnaA HAMAP MF_00377
Gene names
Name:dnaA HAMAP MF_00377
Ordered Locus Names:Rxyl_0001
OrganismRubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) [Complete proteome] [HAMAP]
Taxonomic identifier266117 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Rubrobacteridae › Rubrobacterales › Rubrobacterineae › Rubrobacteraceae › Rubrobacter

Protein attributes

Sequence length450 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids By similarity. HAMAP MF_00377 RuleBase RU000577

Subcellular location

Cytoplasm By similarity HAMAP MF_00377.

Sequence similarities

Belongs to the DnaA family. HAMAP MF_00377 RuleBase RU004227

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding152 – 1598ATP By similarity HAMAP MF_00377

Sequences

Sequence LengthMass (Da)Tools
Q1B046 [UniParc].

Last modified July 11, 2006. Version 1.
Checksum: B04D12F820982F56

FASTA45051,214
        10         20         30         40         50         60 
MQSRAEEVWN EVLDRVSEHI NAPSLKVWFE GTRPVQLYED GLEISVPNTF AKEYIESRFR 

        70         80         90        100        110        120 
PLLEEALDGV LGQEETSIIV SVGGQGRRAG REETSAETGA ESVLSARTPR SLKAKYTFDS 

       130        140        150        160        170        180 
FVIGAGNRFA HAAALAVAEN PGVVYNPLFI YGGVGLGKTH LLRAVGHYVE DQDPTMRVRY 

       190        200        210        220        230        240 
VTCEQFTNDF INSMRDNAPL EFQKRYREND VLLIDDIQFL ENKVETQEAF FHTFNALYEE 

       250        260        270        280        290        300 
NKQIVIASDR HPKYLQTLEN RLVSRFEWGL VTDIQPPDLE TRIAILRKKA MMDRLEVDDE 

       310        320        330        340        350        360 
VLTFIASKVS TNIRELEGAL VRILAYASLY GRQVTVALAE EVLRDILPDS DYREIPIELI 

       370        380        390        400        410        420 
QHEVCRYFGI SKEDLVGTSR SKAFAYPRQV AMYLSRELTD ESLPKIGKAF GGRDHSTVMH 

       430        440        450 
ATNKIANLIN SDRDTFNQIH EITYHIKSKR

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References

[1]"Complete sequence of Rubrobacter xylanophilus DSM 9941."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., da Costa M.S., Rainey F.A., Empadinhas N., Jolivet E., Battista J.R., Richardson P.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 9941 / NBRC 16129.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000386 Genomic DNA. Translation: ABG02982.1.
RefSeqYP_642794.1. NC_008148.1.

3D structure databases

ProteinModelPortalQ1B046.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ1B046.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID4116151.
GenomeReviewsGene locus Rxyl_0001 in contig CP000386_GR.
KEGGrxy:Rxyl_0001.
NMPDRfig|266117.6.peg.1.
PATRIC23366770. VBIRubXyl52678_0001.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0593.
HOGENOMHBG695666.
OMACHTLNAL.
PhylomeDBQ1B046.

Enzyme and pathway databases

BioCycRXYL266117:RXYL_0001-MONOMER.

Family and domain databases

HAMAPMF_00377. DnaA_bact.
[Tree]
InterProIPR003593. ATPase_AAA+_core.
IPR001957. Chromosome_initiator_DnaA.
IPR020591. Chromosome_initiator_DnaA-like.
IPR018312. Chromosome_initiator_DnaA_CS.
IPR013159. DnaA_C.
IPR013317. DnaA_Hda.
IPR010921. Trp_repressor/repl_initiator.
[Graphical view]
Gene3DG3DSA:1.10.1750.10. DnaA_C. 1 hit.
KOK02313.
PfamPF00308. Bac_DnaA. 1 hit.
PF08299. Bac_DnaA_C. 1 hit.
[Graphical view]
PRINTSPR00051. DNAA.
SMARTSM00382. AAA. 1 hit.
SM00760. Bac_DnaA_C. 1 hit.
[Graphical view]
SUPFAMSSF48295. Trp_repress_rep. 1 hit.
TIGRFAMsTIGR00362. DnaA. 1 hit.
PROSITEPS01008. DNAA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ1B046_RUBXD
AccessionPrimary (citable) accession number: Q1B046
Entry history
Integrated into UniProtKB/TrEMBL: July 11, 2006
Last sequence update: July 11, 2006
Last modified: December 14, 2011
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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