Q1AZV3 (Q1AZV3_RUBXD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Diaminopimelate epimerase EMBL ABG03075.1
EC=5.1.1.7 EMBL ABG03075.1

Gene names

Ordered Locus Names:

Rxyl_0095

Organism

Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) [Complete proteome] [HAMAP]

Taxonomic identifier

266117 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Rubrobacteridae › Rubrobacterales › Rubrobacterineae › Rubrobacteraceae › Rubrobacter

Protein attributes

Sequence length	262 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. SAAS SAAS018510
Pathway	Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. SAAS SAAS018510
Subcellular location	Cytoplasm By similarity SAAS SAAS018510.

Ontologies

Keywords
Biological process	Amino-acid biosynthesis Lysine biosynthesis SAAS SAAS018510
Cellular component	Cytoplasm SAAS SAAS018510
Molecular function	Isomerase SAAS SAAS018510 EMBL ABG03075.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lysine biosynthetic process via diaminopimelate Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	diaminopimelate epimerase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1AZV3 [UniParc]. Last modified July 11, 2006. Version 1. Checksum: 292913C33C70366B	FASTA	262	27,915
	10 20 30 40 50 60 MTAFTKMHGA GNDFLLFDWE EVEGADLAEL ARRACDRHFG VGADGILVPA PSASADLRMV 70 80 90 100 110 120 YRNADGSPSE MCGNGIRCLA RYARDRGIVS GDVLAVETGA GVRKVALLEG GRASRVEMGS 130 140 150 160 170 180 PAFGAPVALL GHRFVRVSMG NPHAVAFLPA EEAVERLDLR SVGPRVERDP AFPGRTNVEF 190 200 210 220 230 240 VCVRGPHELR MRIWERGAGE TLASGSGSCA AAAAAIREGL ARGPVRVILD GGEVEVEWSG 250 260 REGDPLYMRG PAEYVCEGRL LL

References

[1]

"Complete sequence of Rubrobacter xylanophilus DSM 9941." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., da Costa M.S., Rainey F.A., Empadinhas N., Jolivet E., Battista J.R., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 9941 / NBRC 16129.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000386 Genomic DNA. Translation: ABG03075.1.
RefSeq	YP_642887.1. NC_008148.1.
3D structure databases
ProteinModelPortal	Q1AZV3.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1AZV3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4117666.
GenomeReviews	Gene locus Rxyl_0095 in contig CP000386_GR.
KEGG	rxy:Rxyl_0095.
NMPDR	fig|266117.6.peg.87.
PATRIC	23366968. VBIRubXyl52678_0098.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0253.
HOGENOM	HBG399442.
OMA	FMTGPAT.
PhylomeDB	Q1AZV3.
Enzyme and pathway databases
BioCyc	RXYL266117:RXYL_0095-MONOMER.
Family and domain databases
HAMAP	MF_00197. DAP_epimerase. [Tree]
InterPro	IPR018510. DAP_epimerase_AS. IPR001653. DAP_epimerase_DapF. [Graphical view]
KO	K01778.
Pfam	PF01678. DAP_epimerase. 2 hits. [Graphical view]
TIGRFAMs	TIGR00652. DapF. 1 hit.
PROSITE	PS01326. DAP_EPIMERASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1AZV3_RUBXD

Accession

Primary (citable) accession number: Q1AZV3

Entry history

Integrated into UniProtKB/TrEMBL:	July 11, 2006
Last sequence update:	July 11, 2006
Last modified:	December 14, 2011
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)