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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi: glycogen biosynthesis

This protein is involved in the pathway glycogen biosynthesis, which is part of Glycan biosynthesis.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway glycogen biosynthesis and in Glycan biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei401NucleophileUniRule annotation1
Active sitei454Proton donorUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase
Biological processCarbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciRXYL266117:G1G6P-321-MONOMER
UniPathwayiUPA00164

Protein family/group databases

CAZyiCBM48 Carbohydrate-Binding Module Family 48
GH13 Glycoside Hydrolase Family 13

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:Rxyl_0316
OrganismiRubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Taxonomic identifieri266117 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaRubrobacteriaRubrobacteralesRubrobacteraceaeRubrobacter
Proteomesi
  • UP000006637 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002606941 – 7221,4-alpha-glucan branching enzyme GlgBAdd BLAST722

Proteomic databases

PRIDEiQ1AZ86

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi266117.Rxyl_0316

Structurei

3D structure databases

ProteinModelPortaliQ1AZ86
SMRiQ1AZ86
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C9C Bacteria
COG0296 LUCA
HOGENOMiHOG000283037
KOiK00700
OMAiEVVHGKS
OrthoDBiPOG091H08D1

Family and domain databases

Gene3Di2.60.40.10, 1 hit
2.60.40.1180, 1 hit
HAMAPiMF_00685 GlgB, 1 hit
InterProiView protein in InterPro
IPR006048 A-amylase/branching_C
IPR037439 Branching_enzy
IPR006407 GlgB
IPR006047 Glyco_hydro_13_cat_dom
IPR004193 Glyco_hydro_13_N
IPR013780 Glyco_hydro_b
IPR017853 Glycoside_hydrolase_SF
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
PANTHERiPTHR43651 PTHR43651, 1 hit
PfamiView protein in Pfam
PF00128 Alpha-amylase, 1 hit
PF02806 Alpha-amylase_C, 1 hit
PF02922 CBM_48, 1 hit
PIRSFiPIRSF000463 GlgB, 1 hit
SMARTiView protein in SMART
SM00642 Aamy, 1 hit
SUPFAMiSSF51445 SSF51445, 1 hit
SSF81296 SSF81296, 1 hit
TIGRFAMsiTIGR01515 branching_enzym, 1 hit

Sequencei

Sequence statusi: Complete.

Q1AZ86-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRREEAIRAV VAGDHPDPFS FLGPHEEAGR RVVRTFLPGA ARVRVLSAAG
60 70 80 90 100
RPLGELERVH PEGFFSGPLS GNGRYRLRVL WEGGGEDELE DPYRFPPVLS
110 120 130 140 150
DYDLYLFGEG NNHRIYRHLG AHPAEMDGVC GTAFAVWAPN ARRVSVVGDF
160 170 180 190 200
NLWDGRRHPM RNRNGVWEIF LPGVGPGALY KYEIKDAGGS LLPLKADPYG
210 220 230 240 250
FFAEQYPGTA SIVWDLSRHR WEDGEWMERR GSRNAPDAPM AIYEVHLGSW
260 270 280 290 300
RRRPDGSHLT YRELAEELVP YVAGLGYTHV ELLPPMEHPF GGSWGYQPVG
310 320 330 340 350
LFAPTSRFGP PEDFKHLVDA FHRAGVGVIA DWVPAHFPED AHGLARFDGT
360 370 380 390 400
HLYEHADPRK GRHPDWGTLI YNYGRNEVRN FLISNALFWL DEYHIDGLRV
410 420 430 440 450
DAVASMLYLD YSRKEGEWVP NEHGGNENLE AIAFLRRMNE VVYGEAPGAF
460 470 480 490 500
TVAEESTAWP MVSRPTYMGG LGFGYKWNMG WMHDTLQYMK EDPVHRRYHH
510 520 530 540 550
DRITFGLLYA FNENFILPLS HDEVVHGKGS LLGRMPGDRW QRFANLRAYY
560 570 580 590 600
GFMYGHPGKQ LLFMGGEFAQ EREWDSGSQL DWHLLEGGEN RGVRDLVADL
610 620 630 640 650
NALYRATPAL HQVDFEPEGF EWVEGGDAEQ SVVSFLRRAR NPEDFVLVVS
660 670 680 690 700
NFTPVVRHGY RVGVPASGPY AEVLNTDDPR YGGSGVANGE LEAEEVPWHG
710 720
RPFSLRLTLP PLATVFLRPR PV
Length:722
Mass (Da):81,740
Last modified:July 11, 2006 - v1
Checksum:i8C113B22C783CEA5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000386 Genomic DNA Translation: ABG03292.1
RefSeqiWP_011563310.1, NC_008148.1

Genome annotation databases

EnsemblBacteriaiABG03292; ABG03292; Rxyl_0316
KEGGirxy:Rxyl_0316

Similar proteinsi

Entry informationi

Entry nameiGLGB_RUBXD
AccessioniPrimary (citable) accession number: Q1AZ86
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 11, 2006
Last modified: May 23, 2018
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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