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Q1AZ86

- GLGB_RUBXD

UniProt

Q1AZ86 - GLGB_RUBXD

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Protein
1,4-alpha-glucan branching enzyme GlgB
Gene
glgB, Rxyl_0316
Organism
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei401 – 4011Nucleophile By similarity
Active sitei454 – 4541Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciRXYL266117:GH8O-320-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:Rxyl_0316
OrganismiRubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Taxonomic identifieri266117 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaRubrobacteridaeRubrobacteralesRubrobacterineaeRubrobacteraceaeRubrobacter
ProteomesiUP000006637: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7227221,4-alpha-glucan branching enzyme GlgBUniRule annotation
PRO_0000260694Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi266117.Rxyl_0316.

Structurei

3D structure databases

ProteinModelPortaliQ1AZ86.
SMRiQ1AZ86. Positions 112-721.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiAKLLFMG.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q1AZ86-1 [UniParc]FASTAAdd to Basket

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MRREEAIRAV VAGDHPDPFS FLGPHEEAGR RVVRTFLPGA ARVRVLSAAG    50
RPLGELERVH PEGFFSGPLS GNGRYRLRVL WEGGGEDELE DPYRFPPVLS 100
DYDLYLFGEG NNHRIYRHLG AHPAEMDGVC GTAFAVWAPN ARRVSVVGDF 150
NLWDGRRHPM RNRNGVWEIF LPGVGPGALY KYEIKDAGGS LLPLKADPYG 200
FFAEQYPGTA SIVWDLSRHR WEDGEWMERR GSRNAPDAPM AIYEVHLGSW 250
RRRPDGSHLT YRELAEELVP YVAGLGYTHV ELLPPMEHPF GGSWGYQPVG 300
LFAPTSRFGP PEDFKHLVDA FHRAGVGVIA DWVPAHFPED AHGLARFDGT 350
HLYEHADPRK GRHPDWGTLI YNYGRNEVRN FLISNALFWL DEYHIDGLRV 400
DAVASMLYLD YSRKEGEWVP NEHGGNENLE AIAFLRRMNE VVYGEAPGAF 450
TVAEESTAWP MVSRPTYMGG LGFGYKWNMG WMHDTLQYMK EDPVHRRYHH 500
DRITFGLLYA FNENFILPLS HDEVVHGKGS LLGRMPGDRW QRFANLRAYY 550
GFMYGHPGKQ LLFMGGEFAQ EREWDSGSQL DWHLLEGGEN RGVRDLVADL 600
NALYRATPAL HQVDFEPEGF EWVEGGDAEQ SVVSFLRRAR NPEDFVLVVS 650
NFTPVVRHGY RVGVPASGPY AEVLNTDDPR YGGSGVANGE LEAEEVPWHG 700
RPFSLRLTLP PLATVFLRPR PV 722
Length:722
Mass (Da):81,740
Last modified:July 11, 2006 - v1
Checksum:i8C113B22C783CEA5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000386 Genomic DNA. Translation: ABG03292.1.
RefSeqiWP_011563310.1. NC_008148.1.
YP_643104.1. NC_008148.1.

Genome annotation databases

EnsemblBacteriaiABG03292; ABG03292; Rxyl_0316.
GeneIDi4114777.
KEGGirxy:Rxyl_0316.
PATRICi23367428. VBIRubXyl52678_0328.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000386 Genomic DNA. Translation: ABG03292.1 .
RefSeqi WP_011563310.1. NC_008148.1.
YP_643104.1. NC_008148.1.

3D structure databases

ProteinModelPortali Q1AZ86.
SMRi Q1AZ86. Positions 112-721.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 266117.Rxyl_0316.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABG03292 ; ABG03292 ; Rxyl_0316 .
GeneIDi 4114777.
KEGGi rxy:Rxyl_0316.
PATRICi 23367428. VBIRubXyl52678_0328.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi AKLLFMG.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci RXYL266117:GH8O-320-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 9941 / NBRC 16129.

Entry informationi

Entry nameiGLGB_RUBXD
AccessioniPrimary (citable) accession number: Q1AZ86
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 11, 2006
Last modified: September 3, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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