Q1AXS9 (Q1AXS9_RUBXD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Transcriptional regulator, LacI family EMBL ABG03799.1

Gene names

Ordered Locus Names:

Rxyl_0831

Organism

Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) [Complete proteome] [HAMAP] EMBL ABG03799.1

Taxonomic identifier

266117 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Rubrobacteridae › Rubrobacterales › Rubrobacterineae › Rubrobacteraceae › Rubrobacter › Rubrobacter xylanophilus

Protein attributes

Sequence length	326 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lacI-type DNA-binding domain. SAAS SAAS000843

Ontologies

Keywords
Biological process	Transcription Transcription regulation SAAS SAAS000843 RuleBase RU000708
Ligand	DNA-binding SAAS SAAS000843 RuleBase RU000708
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1AXS9 [UniParc]. Last modified July 11, 2006. Version 1. Checksum: A0A384320AE2BCEA	FASTA	326	35,700
	10 20 30 40 50 60 MKMRDVARRA GVSPATVSRV LNGVPTVGEE HRRRVLRAIE ELGYRPNRLA SNLRRQKAEM 70 80 90 100 110 120 IGVVVSDIEN PHFTGMVRAV EDAAYRKGYR VLLCNTDETP QKQRSYLEVL AAERVLGVIL 130 140 150 160 170 180 SPSDPEDEEI GELLDLGIPV VAFDRTVADP RADAVVVDNV GGVRAATRRL VAAGHERIGF 190 200 210 220 230 240 VGGSEGIETG SGRLAGYREA MLEAGLEPRV AHGGFRIEGG WEATRRLLSE GLTALVVGNN 250 260 270 280 290 300 LMTIGALRAL REMGLRVPRD LALVAVDDPF WAELVEPPLT TLAQPVREMA GCAMRMMLER 310 320 ISGERSEPRR EVFEFELRVR GSCGTA

References

[1]

"Complete sequence of Rubrobacter xylanophilus DSM 9941." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., da Costa M.S., Rainey F.A., Empadinhas N., Jolivet E., Battista J.R., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 9941 / NBRC 16129.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000386 Genomic DNA. Translation: ABG03799.1.
RefSeq	YP_643611.1. NC_008148.1.
3D structure databases
ProteinModelPortal	Q1AXS9.
ModBase	Search...
Protein-protein interaction databases
STRING	266117.Rxyl_0831.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG03799; ABG03799; Rxyl_0831.
GeneID	4117083.
KEGG	rxy:Rxyl_0831.
PATRIC	23368472. VBIRubXyl52678_0849.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1609.
HOGENOM	HOG000220179.
KO	K02529.
ProtClustDB	CLSK726082.
Enzyme and pathway databases
BioCyc	RXYL266117:GH8O-895-MONOMER.
Family and domain databases
Gene3D	1.10.260.40. 1 hit.
InterPro	IPR010982. Lambda_DNA-bd_dom. IPR000843. Tscrpt_reg_HTH_LacI. [Graphical view]
Pfam	PF00356. LacI. 1 hit. [Graphical view]
PRINTS	PR00036. HTHLACI.
SMART	SM00354. HTH_LACI. 1 hit. [Graphical view]
SUPFAM	SSF47413. Lambda_like_DNA. 1 hit.
PROSITE	PS00356. HTH_LACI_1. 1 hit. PS50932. HTH_LACI_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1AXS9_RUBXD

Accession

Primary (citable) accession number: Q1AXS9

Entry history

Integrated into UniProtKB/TrEMBL:	July 11, 2006
Last sequence update:	July 11, 2006
Last modified:	May 1, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)