Q1AVZ1 (Q1AVZ1_RUBXD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Dihydroorotate oxidase B, catalytic subunit EMBL ABG04437.1
EC=1.3.3.1 EMBL ABG04437.1

Gene names

Ordered Locus Names:

Rxyl_1475

Organism

Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) [Complete proteome] [HAMAP]

Taxonomic identifier

266117 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Rubrobacteridae › Rubrobacterales › Rubrobacterineae › Rubrobacteraceae › Rubrobacter

Protein attributes

Sequence length	304 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor

Binds 1 FMN per subunit By similarity. SAAS SAAS012135

Ontologies

Keywords
Biological process	Pyrimidine biosynthesis SAAS SAAS012135
Ligand	FMN SAAS SAAS012135 Flavoprotein SAAS SAAS012135
Molecular function	Oxidoreductase SAAS SAAS012135 EMBL ABG04437.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	'de novo' pyrimidine base biosynthetic process Inferred from electronic annotation. Source: InterPro UMP biosynthetic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	dihydroorotate oxidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	127	1	Nucleophile By similarity PIRSR PIRSR000164-1

Sequences

	Sequence		Length	Mass (Da)
	Q1AVZ1 [UniParc]. Last modified July 11, 2006. Version 1. Checksum: 5D565B949B5254C7	FASTA	304	30,764
	10 20 30 40 50 60 MVAPELSVEL CGVRLATPLI PASGTLAPEA LGEAAGVYGA VLPKTVTLRP RQGNPPPRVA 70 80 90 100 110 120 ESPAGMVNSI GLQNPGVEEF LRALGAWEVG VPVFVSVAGE TVEEFALLCG RVAADGRAAA 130 140 150 160 170 180 IELNLSCPNV ERGGQVFCAG PSAVEEVVAA CRRAAPDVPL LAKLALEGVV QNALAAEAAG 190 200 210 220 230 240 ADGLTVMNTV PALAVDARAR RVLLRGGLSG PAIKPLALRA VYDVASAAEI PVVGCGGVCS 250 260 270 280 290 300 GADVAEFMLA GARAVQVGSA GFVRDPAEIL AEFERYLREE GLAASELAGA LLPAQGARPV PSER

References

[1]

"Complete sequence of Rubrobacter xylanophilus DSM 9941." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., da Costa M.S., Rainey F.A., Empadinhas N., Jolivet E., Battista J.R., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 9941 / NBRC 16129.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000386 Genomic DNA. Translation: ABG04437.1.
RefSeq	YP_644249.1. NC_008148.1.
3D structure databases
ProteinModelPortal	Q1AVZ1.
ModBase	Search...
Protein-protein interaction databases
STRING	Q1AVZ1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4116141.
GenomeReviews	Gene locus Rxyl_1475 in contig CP000386_GR.
KEGG	rxy:Rxyl_1475.
PATRIC	23369828. VBIRubXyl52678_1513.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0167.
HOGENOM	HBG472415.
OMA	VALRMVW.
PhylomeDB	Q1AVZ1.
Enzyme and pathway databases
BioCyc	RXYL266117:RXYL_1475-MONOMER.
Family and domain databases
HAMAP	MF_00224. DHO_dh_type1. [Tree]
InterPro	IPR013785. Aldolase_TIM. IPR005720. Dihydroorotate_DH. IPR024920. Dihydroorotate_DH_1. IPR012135. Dihydroorotate_DH_1_2. IPR001295. Dihydroorotate_DH_CS. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K00226.
Pfam	PF01180. DHO_dh. 1 hit. [Graphical view]
PIRSF	PIRSF000164. DHO_oxidase. 1 hit.
TIGRFAMs	TIGR01037. PyrD_sub1_fam. 1 hit.
PROSITE	PS00911. DHODEHASE_1. 1 hit. PS00912. DHODEHASE_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q1AVZ1_RUBXD

Accession

Primary (citable) accession number: Q1AVZ1

Entry history

Integrated into UniProtKB/TrEMBL:	July 11, 2006
Last sequence update:	July 11, 2006
Last modified:	January 25, 2012
This is version 50 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)