Q1AR87 (Q1AR87_RUBXD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycine dehydrogenase (Decarboxylating) alpha subunit EMBL ABG06091.1
EC=1.4.4.2 EMBL ABG06091.1

Gene names

Ordered Locus Names:

Rxyl_3186

Organism

Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) [Complete proteome] [HAMAP] EMBL ABG06091.1

Taxonomic identifier

266117 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Rubrobacteridae › Rubrobacterales › Rubrobacterineae › Rubrobacteraceae › Rubrobacter › Rubrobacter xylanophilus

Protein attributes

Sequence length	429 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO2 is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein By similarity. SAAS SAAS023010
Catalytic activity	Glycine + H-protein-lipoyllysine = H-protein-S-aminomethyldihydrolipoyllysine + CO2. SAAS SAAS023010
Subunit structure	The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits By similarity. SAAS SAAS023010

Ontologies

Keywords
Molecular function	Oxidoreductase SAAS SAAS023010 EMBL ABG06091.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glycine decarboxylation via glycine cleavage system Inferred from electronic annotation. Source: HAMAP nucleoside metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glycine dehydrogenase (decarboxylating) activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q1AR87 [UniParc]. Last modified July 11, 2006. Version 1. Checksum: B44701350A2ED099	FASTA	429	45,535
	10 20 30 40 50 60 MARFTPHTEA DIREMLDAIG VGSVDELFED VSPRFEGELG LPPALSEYEA LREVERLAAR 70 80 90 100 110 120 NRAGLPVFLG AGAYDRITPA AVGAIISRGE FMTSYTPYQP EVSQGHLQAI FEFQSVISEL 130 140 150 160 170 180 TGLEVANASV YDAASAVAEA ALMTARLTKR DPKVALSAGL NPRYREVLET YGVEVAGLPF 190 200 210 220 230 240 EGGATDFSGV PRDASGVIVQ SPNFFGVVED VGAAAEAARE VGALAVAVCD PIALAVLEPP 250 260 270 280 290 300 GRLGADIAVG ETQPLGVPLM FGGPYAGYMA TRQRFVRQLP GRIAGETVDR EGRLAYVLTL 310 320 330 340 350 360 RAREQDIRRA RANSNICTNQ ALTALAATIY TALLGPEGLR EVAELSISKA HYLAGRLGEA 370 380 390 400 410 420 GLRLRYPEAP FLWEFAVEMP DVKGANEALL EAGIVGGLDL GDGAMLVAVT EKRTKEELDA FVEVVANAG

References

[1]

"Complete sequence of Rubrobacter xylanophilus DSM 9941." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., da Costa M.S., Rainey F.A., Empadinhas N., Jolivet E., Battista J.R., Richardson P. Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 9941 / NBRC 16129.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000386 Genomic DNA. Translation: ABG06091.1.
RefSeq	YP_645903.1. NC_008148.1.
3D structure databases
ProteinModelPortal	Q1AR87.
ModBase	Search...
Protein-protein interaction databases
STRING	266117.Rxyl_3186.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABG06091; ABG06091; Rxyl_3186.
GeneID	4114983.
KEGG	rxy:Rxyl_3186.
PATRIC	23373164. VBIRubXyl52678_3152.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0403.
HOGENOM	HOG000132025.
KO	K00282.
OMA	MYDGASA.
ProtClustDB	PRK00451.
Enzyme and pathway databases
BioCyc	RXYL266117:GH8O-3250-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
HAMAP	MF_00712. GcvPA.
InterPro	IPR020580. GDC-P_N. IPR020581. GDC_P. IPR023010. GDC_P_su1. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11773. PTHR11773. 1 hit.
Pfam	PF02347. GDC-P. 1 hit. [Graphical view]
PIRSF	PIRSF006815. GcvPA. 1 hit.
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q1AR87_RUBXD

Accession

Primary (citable) accession number: Q1AR87

Entry history

Integrated into UniProtKB/TrEMBL:	July 11, 2006
Last sequence update:	July 11, 2006
Last modified:	May 1, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)