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Protein
Submitted name:

C.Elegans Chromodomain protein

Gene

cec-5

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
C.Elegans Chromodomain proteinImported
Gene namesi
Name:cec-5Imported
ORF Names:CELE_F32E10.6Imported, F32E10.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF32E10.6 ; CE04479 ; WBGene00017993 ; cec-5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

Expressioni

Gene expression databases

BgeeiWBGene00017993

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi6239.F32E10.6.1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini115 – 177ChromoInterPro annotationAdd BLAST63

Phylogenomic databases

eggNOGiKOG1911 Eukaryota
ENOG4111JKD LUCA
GeneTreeiENSGT00730000112558
HOGENOMiHOG000018019
InParanoidiQ19973
OMAiKIIAHRF
OrthoDBiEOG091G0593

Family and domain databases

CDDicd00024 CHROMO, 1 hit
InterProiView protein in InterPro
IPR037948 Cec-4
IPR016197 Chromo-like_dom_sf
IPR000953 Chromo/chromo_shadow_dom
IPR023780 Chromo_domain
PANTHERiPTHR10503 PTHR10503, 2 hits
PfamiView protein in Pfam
PF00385 Chromo, 1 hit
SMARTiView protein in SMART
SM00298 CHROMO, 1 hit
SUPFAMiSSF54160 SSF54160, 1 hit
PROSITEiView protein in PROSITE
PS50013 CHROMO_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q19973-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKSSGSAP SRASGRSGKQ TTHFQVVHDA TKHRAKRSKS SKSGDSKSSS
60 70 80 90 100
QDASVKKILD HKLFNTHYVE YNVLLSNGRK MMATEFDFEG KKEQKLLADY
110 120 130 140 150
KYKITNQDDD PDEDFAVEKI IAHRFSGKKN KPLFLVMWRG YPNPVSHSEM
160 170 180 190 200
WENELSNCKD LLEAYKDSHD MKPPPVKKSN KKKGSKKSPK KSAKSKDDDS
210 220 230 240 250
SDEEEEEEVK EKSPKKSSKS TKRAASDDDE EEEPVATKKS KKSKRAETPE
260 270 280 290 300
EEDDEEEEVV KTPKKTKKSK RAETPEEEDE VEEEVVKTPK KSKSSKSPKK
310 320 330 340 350
SKRAETSDEE DEDEEDEKEA PKSSKKQEKA KSSKRVAEDS GNEEEDQDNT
360 370
SGSGSEGEEE EEEASSNGKR KSRH
Length:374
Mass (Da):42,276
Last modified:November 1, 1996 - v1
Checksum:i838CAC56270D0566
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LC127218 mRNA Translation: BAV54111.1
BX284604 Genomic DNA Translation: CCD70437.1
PIRiC88734
RefSeqiNP_501232.1, NM_068831.6
UniGeneiCel.7615

Genome annotation databases

EnsemblMetazoaiF32E10.6.1; F32E10.6.1; WBGene00017993
F32E10.6.2; F32E10.6.2; WBGene00017993
F32E10.6.3; F32E10.6.3; WBGene00017993
GeneIDi177537
KEGGicel:CELE_F32E10.6
UCSCiF32E10.6.1 c. elegans

Entry informationi

Entry nameiQ19973_CAEEL
AccessioniPrimary (citable) accession number: Q19973
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 20, 2018
This is version 134 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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