Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

C.Elegans Chromodomain protein

Gene

cec-5

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
C.Elegans Chromodomain proteinImported
Gene namesi
Name:cec-5Imported
ORF Names:CELE_F32E10.6Imported, F32E10.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF32E10.6; CE04479; WBGene00017993; cec-5.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

EPDiQ19973.
PaxDbiQ19973.

Interactioni

Protein-protein interaction databases

STRINGi6239.F32E10.6.1.

Structurei

3D structure databases

ProteinModelPortaliQ19973.
SMRiQ19973. Positions 113-169.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini115 – 17763ChromoInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1911. Eukaryota.
ENOG4111JKD. LUCA.
GeneTreeiENSGT00730000112558.
HOGENOMiHOG000018019.
InParanoidiQ19973.
OMAiKIIAHRF.
OrthoDBiEOG7DNP13.

Family and domain databases

InterProiIPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
[Graphical view]
PfamiPF00385. Chromo. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 1 hit.
[Graphical view]
SUPFAMiSSF54160. SSF54160. 1 hit.
PROSITEiPS50013. CHROMO_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q19973-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKSSGSAP SRASGRSGKQ TTHFQVVHDA TKHRAKRSKS SKSGDSKSSS
60 70 80 90 100
QDASVKKILD HKLFNTHYVE YNVLLSNGRK MMATEFDFEG KKEQKLLADY
110 120 130 140 150
KYKITNQDDD PDEDFAVEKI IAHRFSGKKN KPLFLVMWRG YPNPVSHSEM
160 170 180 190 200
WENELSNCKD LLEAYKDSHD MKPPPVKKSN KKKGSKKSPK KSAKSKDDDS
210 220 230 240 250
SDEEEEEEVK EKSPKKSSKS TKRAASDDDE EEEPVATKKS KKSKRAETPE
260 270 280 290 300
EEDDEEEEVV KTPKKTKKSK RAETPEEEDE VEEEVVKTPK KSKSSKSPKK
310 320 330 340 350
SKRAETSDEE DEDEEDEKEA PKSSKKQEKA KSSKRVAEDS GNEEEDQDNT
360 370
SGSGSEGEEE EEEASSNGKR KSRH
Length:374
Mass (Da):42,276
Last modified:November 1, 1996 - v1
Checksum:i838CAC56270D0566
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD70437.1.
PIRiC88734.
RefSeqiNP_501232.1. NM_068831.6.
UniGeneiCel.7615.

Genome annotation databases

EnsemblMetazoaiF32E10.6.1; F32E10.6.1; WBGene00017993.
F32E10.6.2; F32E10.6.2; WBGene00017993.
F32E10.6.3; F32E10.6.3; WBGene00017993.
GeneIDi177537.
KEGGicel:CELE_F32E10.6.
UCSCiF32E10.6.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD70437.1.
PIRiC88734.
RefSeqiNP_501232.1. NM_068831.6.
UniGeneiCel.7615.

3D structure databases

ProteinModelPortaliQ19973.
SMRiQ19973. Positions 113-169.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F32E10.6.1.

Proteomic databases

EPDiQ19973.
PaxDbiQ19973.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF32E10.6.1; F32E10.6.1; WBGene00017993.
F32E10.6.2; F32E10.6.2; WBGene00017993.
F32E10.6.3; F32E10.6.3; WBGene00017993.
GeneIDi177537.
KEGGicel:CELE_F32E10.6.
UCSCiF32E10.6.1. c. elegans.

Organism-specific databases

CTDi177537.
WormBaseiF32E10.6; CE04479; WBGene00017993; cec-5.

Phylogenomic databases

eggNOGiKOG1911. Eukaryota.
ENOG4111JKD. LUCA.
GeneTreeiENSGT00730000112558.
HOGENOMiHOG000018019.
InParanoidiQ19973.
OMAiKIIAHRF.
OrthoDBiEOG7DNP13.

Family and domain databases

InterProiIPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
[Graphical view]
PfamiPF00385. Chromo. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 1 hit.
[Graphical view]
SUPFAMiSSF54160. SSF54160. 1 hit.
PROSITEiPS50013. CHROMO_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ19973_CAEEL
AccessioniPrimary (citable) accession number: Q19973
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 8, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.