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Protein
Submitted name:

Fatty Acid CoA Synthetase family

Gene

acs-20

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-804914. Transport of fatty acids.

Names & Taxonomyi

Protein namesi
Submitted name:
Fatty Acid CoA Synthetase familyImported
Gene namesi
Name:acs-20Imported
ORF Names:CELE_F28D1.9Imported, F28D1.9Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF28D1.9; CE47963; WBGene00009218; acs-20.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei40 – 6930HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • intracellular membrane-bounded organelle Source: WormBase
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ19878.
PaxDbiQ19878.
PRIDEiQ19878.

Interactioni

Protein-protein interaction databases

STRINGi6239.F28D1.9.

Structurei

3D structure databases

ProteinModelPortaliQ19878.
SMRiQ19878. Positions 109-640.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini118 – 548431AMP-bindingInterPro annotationAdd
BLAST
Domaini557 – 63781AMP-binding_CInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1179. Eukaryota.
ENOG410XQ8T. LUCA.
GeneTreeiENSGT00550000074420.
HOGENOMiHOG000044189.
InParanoidiQ19878.
KOiK08745.
OMAiPYVHEFE.
OrthoDBiEOG7W6WKB.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q19878-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTDRANCSTS TSNWRKPKPL ATDVLEKPAR LLPKMKLEEL VTVMLLTVAV
60 70 80 90 100
IAQNLPIGVI LAGVLILYIT VVHGDFIYRS YLTLNRDLTG LALIIEVKID
110 120 130 140 150
LWWRLHQNKG IHELFLDIVK KNPNKPAMID IETNTTETYA EFNAHCNRYA
160 170 180 190 200
NYFQGLGYRS GDVVALYMEN SVEFVAAWMG LAKIGVVTAW INSNLKREQL
210 220 230 240 250
VHCITASKTK AIITSVTLQN IMLDAIDQKL FDVEGIEVYS VGEPKKNSGF
260 270 280 290 300
KNLKKKLDAQ ITTEPKTLDI VDFKSILCFI YTSGTTGMPK AAVMKHFRYY
310 320 330 340 350
SIAVGAAKSF GIRPSDRMYV SMPIYHTAAG ILGVGQALLG GSSCVIRKKF
360 370 380 390 400
SASNFWRDCV KYDCTVSQYI GEICRYLLAQ PVVEEESRHR MRLLVGNGLR
410 420 430 440 450
AEIWQPFVDR FRVRIGELYG STEGTSSLVN IDGHVGACGF LPISPLTKKM
460 470 480 490 500
HPVRLIKVDD VTGEAIRTSD GLCIACNPGE SGAMVSTIRK NNPLLQFEGY
510 520 530 540 550
LNKKETNKKI IRDVFAKGDS CFLTGDLLHW DRLGYVYFKD RTGDTFRWKG
560 570 580 590 600
ENVSTTEVEA ILHPITGLSD ATVYGVEVPQ REGRVGMASV VRVVSHEEDE
610 620 630 640 650
TQFVHRVGAR LASSLTSYAI PQFIRICQDV EKTGTFKLVK TNLQRLGIMD
660 670 680
APSDSIYIYN SENRNFVPFD NDLRCKVSLG SYPF
Length:684
Mass (Da):76,550
Last modified:February 6, 2013 - v3
Checksum:iD68C060F62F4DC73
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94602.3.
PIRiT21498.
RefSeqiNP_502367.3. NM_069966.7.

Genome annotation databases

EnsemblMetazoaiF28D1.9; F28D1.9; WBGene00009218.
GeneIDi178190.
KEGGicel:CELE_F28D1.9.
UCSCiF28D1.9. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94602.3.
PIRiT21498.
RefSeqiNP_502367.3. NM_069966.7.

3D structure databases

ProteinModelPortaliQ19878.
SMRiQ19878. Positions 109-640.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F28D1.9.

Proteomic databases

EPDiQ19878.
PaxDbiQ19878.
PRIDEiQ19878.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF28D1.9; F28D1.9; WBGene00009218.
GeneIDi178190.
KEGGicel:CELE_F28D1.9.
UCSCiF28D1.9. c. elegans.

Organism-specific databases

CTDi178190.
WormBaseiF28D1.9; CE47963; WBGene00009218; acs-20.

Phylogenomic databases

eggNOGiKOG1179. Eukaryota.
ENOG410XQ8T. LUCA.
GeneTreeiENSGT00550000074420.
HOGENOMiHOG000044189.
InParanoidiQ19878.
KOiK08745.
OMAiPYVHEFE.
OrthoDBiEOG7W6WKB.

Enzyme and pathway databases

ReactomeiR-CEL-804914. Transport of fatty acids.

Family and domain databases

InterProiIPR025110. AMP-bd_C.
IPR020845. AMP-binding_CS.
IPR000873. AMP-dep_Synth/Lig.
[Graphical view]
PfamiPF00501. AMP-binding. 1 hit.
PF13193. AMP-binding_C. 1 hit.
[Graphical view]
PROSITEiPS00455. AMP_BINDING. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ19878_CAEEL
AccessioniPrimary (citable) accession number: Q19878
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: February 6, 2013
Last modified: July 6, 2016
This is version 105 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.