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Protein

40S ribosomal protein S23

Gene

rps-23

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S23
Gene namesi
Name:rps-23
ORF Names:F28D1.7
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF28D1.7a; CE05747; WBGene00004492; rps-23.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001464701 – 14340S ribosomal protein S23Add BLAST143

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei62HydroxyprolineBy similarity1

Keywords - PTMi

Hydroxylation

Proteomic databases

EPDiQ19877.
PaxDbiQ19877.
PeptideAtlasiQ19877.
PRIDEiQ19877.

Expressioni

Gene expression databases

BgeeiWBGene00004492.

Interactioni

Protein-protein interaction databases

BioGridi43281. 1 interactor.
DIPiDIP-27207N.
MINTiMINT-1046438.
STRINGi6239.F28D1.7.3.

Structurei

3D structure databases

ProteinModelPortaliQ19877.
SMRiQ19877.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1749. Eukaryota.
COG0048. LUCA.
GeneTreeiENSGT00550000074784.
HOGENOMiHOG000040064.
InParanoidiQ19877.
KOiK02973.
OMAiKFRWSQR.
OrthoDBiEOG091G0R2G.
PhylomeDBiQ19877.

Family and domain databases

CDDicd03367. Ribosomal_S23. 1 hit.
InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR006032. Ribosomal_S12/S23.
IPR005680. Ribosomal_S23_euk/arc.
PANTHERiPTHR11652. PTHR11652. 1 hit.
PfamiView protein in Pfam
PF00164. Ribosom_S12_S23. 1 hit.
PIRSFiPIRSF002133. Ribosomal_S12/S23. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00982. uS12_E_A. 1 hit.
PROSITEiView protein in PROSITE
PS00055. RIBOSOMAL_S12. 1 hit.

Sequencei

Sequence statusi: Complete.

Q19877-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKPKGLCTA RKLKTHRQEQ RWNDKRYKKA HIGTRWKSNP FGGASHAKGI
60 70 80 90 100
VLEKIGVEAK QPNSAIRKCV RVQLIKNGKK ITAFVPNDGC LNFVEENDEV
110 120 130 140
LVSGFGRSGH AVGDIPGVRF KIVKVANTSL IALFKGKKER PRS
Length:143
Mass (Da):15,875
Last modified:November 1, 1996 - v1
Checksum:i04DE9FDAE682AF5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z70684 Genomic DNA. Translation: CAA94601.1.
PIRiT21497.
RefSeqiNP_502365.1. NM_069964.5.
UniGeneiCel.7839.

Genome annotation databases

EnsemblMetazoaiF28D1.7a.1; F28D1.7a.1; WBGene00004492.
F28D1.7a.2; F28D1.7a.2; WBGene00004492.
GeneIDi178188.
KEGGicel:CELE_F28D1.7.
UCSCiF28D1.7.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS23_CAEEL
AccessioniPrimary (citable) accession number: Q19877
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: June 7, 2017
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families