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Protein
Submitted name:

THaumatiN family

Gene

thn-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • defense response to Gram-negative bacterium Source: WormBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
THaumatiN familyImported
Gene namesi
Name:thn-2Imported
ORF Names:CELE_F28D1.5Imported, F28D1.5Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF28D1.5; CE05745; WBGene00009215; thn-2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 233214Sequence analysisPRO_5004187207Add
BLAST

Proteomic databases

EPDiQ19876.
PaxDbiQ19876.
PRIDEiQ19876.

Interactioni

Protein-protein interaction databases

STRINGi6239.F28D1.5.

Structurei

3D structure databases

ProteinModelPortaliQ19876.
SMRiQ19876. Positions 22-157.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG410IYET. Eukaryota.
ENOG4111KEV. LUCA.
GeneTreeiENSGT00390000012004.
HOGENOMiHOG000238454.
InParanoidiQ19876.
OMAiGVATRIC.
OrthoDBiEOG7X0VJV.
PhylomeDBiQ19876.

Family and domain databases

Gene3Di2.60.110.10. 1 hit.
InterProiIPR001938. Thaumatin.
[Graphical view]
PfamiPF00314. Thaumatin. 1 hit.
[Graphical view]
PIRSFiPIRSF002703. Thaumatin. 1 hit.
PRINTSiPR00347. THAUMATIN.
SMARTiSM00205. THN. 1 hit.
[Graphical view]
SUPFAMiSSF49870. SSF49870. 1 hit.
PROSITEiPS51367. THAUMATIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q19876-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALVKLTLAL LLLALGADAR TITIYNKCPF TIWPGILGPG NPAGGGFQLT
60 70 80 90 100
AGQSRNIDVD DAWTAGRVWA RTGCDGNFNC ETGFCRNSEQ CNGAGGVPPA
110 120 130 140 150
SLAEFTLKAW GGQDFYDVSL VDGYNLPVLI DPHGGSGCKR AGGCVKDINA
160 170 180 190 200
ECPAALSVKG HNGNTVACKS GCLGYNTDQE CCRGAYGTPD KCHRSATAQM
210 220 230
FKDACPTAYS YAYDDGSSTF TCRATASYTV QFC
Length:233
Mass (Da):24,447
Last modified:November 1, 1996 - v1
Checksum:i0251B977EC2345C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94600.1.
PIRiT21496.
RefSeqiNP_502362.1. NM_069961.3.
UniGeneiCel.38567.

Genome annotation databases

EnsemblMetazoaiF28D1.5; F28D1.5; WBGene00009215.
GeneIDi178187.
KEGGicel:CELE_F28D1.5.
UCSCiF28D1.5. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94600.1.
PIRiT21496.
RefSeqiNP_502362.1. NM_069961.3.
UniGeneiCel.38567.

3D structure databases

ProteinModelPortaliQ19876.
SMRiQ19876. Positions 22-157.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F28D1.5.

Proteomic databases

EPDiQ19876.
PaxDbiQ19876.
PRIDEiQ19876.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF28D1.5; F28D1.5; WBGene00009215.
GeneIDi178187.
KEGGicel:CELE_F28D1.5.
UCSCiF28D1.5. c. elegans.

Organism-specific databases

CTDi178187.
WormBaseiF28D1.5; CE05745; WBGene00009215; thn-2.

Phylogenomic databases

eggNOGiENOG410IYET. Eukaryota.
ENOG4111KEV. LUCA.
GeneTreeiENSGT00390000012004.
HOGENOMiHOG000238454.
InParanoidiQ19876.
OMAiGVATRIC.
OrthoDBiEOG7X0VJV.
PhylomeDBiQ19876.

Miscellaneous databases

NextBioi900086.

Family and domain databases

Gene3Di2.60.110.10. 1 hit.
InterProiIPR001938. Thaumatin.
[Graphical view]
PfamiPF00314. Thaumatin. 1 hit.
[Graphical view]
PIRSFiPIRSF002703. Thaumatin. 1 hit.
PRINTSiPR00347. THAUMATIN.
SMARTiSM00205. THN. 1 hit.
[Graphical view]
SUPFAMiSSF49870. SSF49870. 1 hit.
PROSITEiPS51367. THAUMATIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ19876_CAEEL
AccessioniPrimary (citable) accession number: Q19876
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.