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Protein
Submitted name:

THaumatiN family

Gene

thn-3

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
THaumatiN familyImported
Gene namesi
Name:thn-3Imported
ORF Names:CELE_F28D1.4Imported, F28D1.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF28D1.4a; CE49948; WBGene00009214; thn-3.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ19875.

Interactioni

Protein-protein interaction databases

STRINGi6239.F28D1.4.

Structurei

3D structure databases

ProteinModelPortaliQ19875.
SMRiQ19875. Positions 7-149.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG410IYET. Eukaryota.
ENOG4111KEV. LUCA.
GeneTreeiENSGT00390000012004.
HOGENOMiHOG000238454.
InParanoidiQ19875.
OrthoDBiEOG7X0VJV.

Family and domain databases

Gene3Di2.60.110.10. 1 hit.
InterProiIPR001938. Thaumatin.
[Graphical view]
PfamiPF00314. Thaumatin. 1 hit.
[Graphical view]
PIRSFiPIRSF002703. Thaumatin. 1 hit.
PRINTSiPR00347. THAUMATIN.
SMARTiSM00205. THN. 1 hit.
[Graphical view]
SUPFAMiSSF49870. SSF49870. 1 hit.
PROSITEiPS51367. THAUMATIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q19875-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKLRACNGA GGVPPASLAE FTLNGDGGKD FYDVSLVDGY NLPVLIDPND
60 70 80 90 100
GSGCDRAGGC VKDMNAECPA DLAVQGSNGN TVACKFGCVG YNTDEECCRG
110 120 130 140
VRNTPETCDR STTAQKFKDA CPTAYSYAYD DKSSTFTCQT GATYTVQFC
Length:149
Mass (Da):15,726
Last modified:September 3, 2014 - v2
Checksum:iC23AEF5D35E8E8C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94599.2.
PIRiT21495.
RefSeqiNP_502361.2. NM_069960.2.

Genome annotation databases

EnsemblMetazoaiF28D1.4a; F28D1.4a; WBGene00009214.
GeneIDi185061.
KEGGicel:CELE_F28D1.4.
UCSCiF28D1.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94599.2.
PIRiT21495.
RefSeqiNP_502361.2. NM_069960.2.

3D structure databases

ProteinModelPortaliQ19875.
SMRiQ19875. Positions 7-149.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F28D1.4.

Proteomic databases

PaxDbiQ19875.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF28D1.4a; F28D1.4a; WBGene00009214.
GeneIDi185061.
KEGGicel:CELE_F28D1.4.
UCSCiF28D1.4. c. elegans.

Organism-specific databases

CTDi185061.
WormBaseiF28D1.4a; CE49948; WBGene00009214; thn-3.

Phylogenomic databases

eggNOGiENOG410IYET. Eukaryota.
ENOG4111KEV. LUCA.
GeneTreeiENSGT00390000012004.
HOGENOMiHOG000238454.
InParanoidiQ19875.
OrthoDBiEOG7X0VJV.

Family and domain databases

Gene3Di2.60.110.10. 1 hit.
InterProiIPR001938. Thaumatin.
[Graphical view]
PfamiPF00314. Thaumatin. 1 hit.
[Graphical view]
PIRSFiPIRSF002703. Thaumatin. 1 hit.
PRINTSiPR00347. THAUMATIN.
SMARTiSM00205. THN. 1 hit.
[Graphical view]
SUPFAMiSSF49870. SSF49870. 1 hit.
PROSITEiPS51367. THAUMATIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ19875_CAEEL
AccessioniPrimary (citable) accession number: Q19875
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: September 3, 2014
Last modified: June 8, 2016
This is version 104 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.