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Protein
Submitted name:

Cleavage and Polyadenylation Factor

Gene

cpf-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-109688. Cleavage of Growing Transcript in the Termination Region.
R-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72187. mRNA 3'-end processing.
R-CEL-77595. Processing of Intronless Pre-mRNAs.
SignaLinkiQ19864.

Names & Taxonomyi

Protein namesi
Submitted name:
Cleavage and Polyadenylation FactorImported
Gene namesi
Name:cpf-1Imported
ORF Names:CELE_F28C6.3Imported, F28C6.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF28C6.3; CE03274; WBGene00000773; cpf-1.

PTM / Processingi

Proteomic databases

EPDiQ19864.
PaxDbiQ19864.
PeptideAtlasiQ19864.

Expressioni

Gene expression databases

BgeeiWBGene00000773.

Interactioni

Protein-protein interaction databases

STRINGi6239.F28C6.3.

Structurei

3D structure databases

ProteinModelPortaliQ19864.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini105 – 430WD_REPEATS_REGIONInterPro annotationAdd BLAST326

Phylogenomic databases

eggNOGiKOG0640. Eukaryota.
ENOG410XPWJ. LUCA.
GeneTreeiENSGT00860000133707.
HOGENOMiHOG000234077.
InParanoidiQ19864.
KOiK14406.
OMAiWELSTNR.
OrthoDBiEOG091G07AW.
PhylomeDBiQ19864.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR032028. CSTF1_dimer.
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF16699. CSTF1_dimer. 1 hit.
PF00400. WD40. 4 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 4 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q19864-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPDIKDREY MYRLIIGQLF YDGHQQIAVN LANTLGCSAP APPPSDKLFR
60 70 80 90 100
LVTIAKQFVE DPDYKAEEKS SPMQFEPVSS GLDLEYDADV QPVSSEPSEY
110 120 130 140 150
ETIYLTVHKA PCRAAAFNSD GSLVATGSAD CSIKIMDVER ILAREKEHRE
160 170 180 190 200
MNENGPDAHH PVIRTLYDHV DDVNTVIFHP RDSILISGSN DKTVKLFDFS
210 220 230 240 250
KTAVKKAMKT LSEVYPVRAL SCHPGGEFLL VATDHPTVRL YNIETAQAYA
260 270 280 290 300
SANPDDQHTE SVTDVHYSEN ARLYVTASKD GHVKIWDGVS NRCVETFKRA
310 320 330 340 350
HDGSSICSAK FTKNGKYILT SGMDSIVKLW ELSTNRCLIV YTGAGATGAQ
360 370 380 390 400
DFATNASFNH NEDYVLFPDE KSGSMCSWDA RNSDRKRLLA LGHTSACRTF
410 420 430
VHSPSMPAFM TGSDDHRARF WYRKPATNEH
Length:430
Mass (Da):47,962
Last modified:November 1, 1996 - v1
Checksum:iACF5EBD9AAAF56EC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAA92670.1.
PIRiT21482.
RefSeqiNP_495822.1. NM_063421.5.
UniGeneiCel.15284.

Genome annotation databases

EnsemblMetazoaiF28C6.3; F28C6.3; WBGene00000773.
GeneIDi174378.
KEGGicel:CELE_F28C6.3.
UCSCiF28C6.3. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAA92670.1.
PIRiT21482.
RefSeqiNP_495822.1. NM_063421.5.
UniGeneiCel.15284.

3D structure databases

ProteinModelPortaliQ19864.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F28C6.3.

Proteomic databases

EPDiQ19864.
PaxDbiQ19864.
PeptideAtlasiQ19864.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF28C6.3; F28C6.3; WBGene00000773.
GeneIDi174378.
KEGGicel:CELE_F28C6.3.
UCSCiF28C6.3. c. elegans.

Organism-specific databases

CTDi174378.
WormBaseiF28C6.3; CE03274; WBGene00000773; cpf-1.

Phylogenomic databases

eggNOGiKOG0640. Eukaryota.
ENOG410XPWJ. LUCA.
GeneTreeiENSGT00860000133707.
HOGENOMiHOG000234077.
InParanoidiQ19864.
KOiK14406.
OMAiWELSTNR.
OrthoDBiEOG091G07AW.
PhylomeDBiQ19864.

Enzyme and pathway databases

ReactomeiR-CEL-109688. Cleavage of Growing Transcript in the Termination Region.
R-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72187. mRNA 3'-end processing.
R-CEL-77595. Processing of Intronless Pre-mRNAs.
SignaLinkiQ19864.

Gene expression databases

BgeeiWBGene00000773.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR032028. CSTF1_dimer.
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF16699. CSTF1_dimer. 1 hit.
PF00400. WD40. 4 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 4 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ19864_CAEEL
AccessioniPrimary (citable) accession number: Q19864
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 138 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.