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Protein
Submitted name:

DeHydrogenases, Short chain

Gene

dhs-29

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
DeHydrogenases, Short chainImported
Gene namesi
Name:dhs-29Imported
ORF Names:CELE_F27D9.6Imported, F27D9.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiF27D9.6; CE28011; WBGene00000992; dhs-29.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei322 – 34120HelicalSequence analysisAdd
BLAST
Transmembranei362 – 38625HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ19843.

Expressioni

Gene expression databases

BgeeiWBGene00000992.

Interactioni

Protein-protein interaction databases

IntActiQ19843. 1 interaction.
STRINGi6239.F27D9.6.

Structurei

3D structure databases

ProteinModelPortaliQ19843.
SMRiQ19843. Positions 41-265.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1201. Eukaryota.
COG1028. LUCA.
GeneTreeiENSGT00540000069900.
HOGENOMiHOG000020967.
InParanoidiQ19843.
OMAiCKFRWFM.
OrthoDBiEOG091G0825.
PhylomeDBiQ19843.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR002347. SDR_fam.
IPR028110. TMEM254.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 2 hits.
PfamiPF00106. adh_short. 1 hit.
PF14934. DUF4499. 1 hit.
[Graphical view]
PRINTSiPR00081. GDHRDH.
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

Q19843-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYTSWAWKLW STLGVALRIL FIDIPMDIHR FLNLRQKSVQ GQTVIITGGG
60 70 80 90 100
SGLGRAMALD FAKRKAKVAI IDVNKEGGLE TVKTIAAEGN MAKFWYCDIS
110 120 130 140 150
DVDNMKKTAK EIEDTFGDVN IVICNAAILS FTSFMEISDE LLRKCLDVNI
160 170 180 190 200
FGTINTIRAF LPKMETKNDG HIVCVCSIAG WSGETMGLSY CTSKFAVRGA
210 220 230 240 250
MESLQMELRD RGLEGIKTTT LYPYFARTPM ILENNMRPTC TWFPFMSIRS
260 270 280 290 300
CSKRMVDSIL KEKVHAFVPS YITLIPFVKN FCSLQVCRSL RNYLGVKYSA
310 320 330 340 350
SDPSFCKLTL IEMSDYYKTP QLFWWLLIVP ALAINYISYA HPAAALNIPL
360 370 380 390 400
IGSLVHKIGT EYPFVALLTN LFALVAHAGE ALYALYLCHK ANISFASTAK
410 420
WVVQTFILGF PSLSILSRYE AKQRKNN
Length:427
Mass (Da):47,959
Last modified:October 1, 2001 - v2
Checksum:i14C62890C0E1C48D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CCD67921.1.
PIRiT16188.
RefSeqiNP_509294.1. NM_076893.3.
UniGeneiCel.1113.

Genome annotation databases

EnsemblMetazoaiF27D9.6; F27D9.6; WBGene00000992.
GeneIDi181027.
KEGGicel:CELE_F27D9.6.
UCSCiF27D9.6. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CCD67921.1.
PIRiT16188.
RefSeqiNP_509294.1. NM_076893.3.
UniGeneiCel.1113.

3D structure databases

ProteinModelPortaliQ19843.
SMRiQ19843. Positions 41-265.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ19843. 1 interaction.
STRINGi6239.F27D9.6.

Proteomic databases

PaxDbiQ19843.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF27D9.6; F27D9.6; WBGene00000992.
GeneIDi181027.
KEGGicel:CELE_F27D9.6.
UCSCiF27D9.6. c. elegans.

Organism-specific databases

CTDi181027.
WormBaseiF27D9.6; CE28011; WBGene00000992; dhs-29.

Phylogenomic databases

eggNOGiKOG1201. Eukaryota.
COG1028. LUCA.
GeneTreeiENSGT00540000069900.
HOGENOMiHOG000020967.
InParanoidiQ19843.
OMAiCKFRWFM.
OrthoDBiEOG091G0825.
PhylomeDBiQ19843.

Gene expression databases

BgeeiWBGene00000992.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR002347. SDR_fam.
IPR028110. TMEM254.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 2 hits.
PfamiPF00106. adh_short. 1 hit.
PF14934. DUF4499. 1 hit.
[Graphical view]
PRINTSiPR00081. GDHRDH.
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ19843_CAEEL
AccessioniPrimary (citable) accession number: Q19843
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: October 1, 2001
Last modified: September 7, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.