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Protein
Submitted name:

SyNaptoBrevin related

Gene

snb-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
SyNaptoBrevin relatedImported
Gene namesi
Name:snb-2Imported
ORF Names:CELE_F23H12.1Imported, F23H12.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF23H12.1; CE42855; WBGene00004898; snb-2.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei93 – 11321HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ19767.
PaxDbiQ19767.

Expressioni

Gene expression databases

ExpressionAtlasiQ19767. baseline.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi6239.F23H12.1.2.

Structurei

3D structure databases

ProteinModelPortaliQ19767.
SMRiQ19767. Positions 28-99.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini29 – 8961V-SNARE coiled-coil homologyInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG0860. Eukaryota.
COG5143. LUCA.
GeneTreeiENSGT00550000074449.
InParanoidiQ19767.
OMAiYWWQNAR.
PhylomeDBiQ19767.

Family and domain databases

Gene3Di1.10.3840.10. 1 hit.
InterProiIPR001388. Synaptobrevin.
IPR016444. Synaptobrevin/VAMP.
[Graphical view]
PfamiPF00957. Synaptobrevin. 1 hit.
[Graphical view]
PIRSFiPIRSF005409. Synaptobrevin_euk. 1 hit.
PRINTSiPR00219. SYNAPTOBREVN.
PROSITEiPS50892. V_SNARE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q19767-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSANNEANKD LEAGNGEAQP PTGTYNTKRM QMAQAQVNEV IDVMRNNVNK
60 70 80 90 100
VMERDVQLNS LDHRAEVLQN GASQFQQSSR TLRQKYWWQN IRMMIIIGLI
110
AFLVIGIFLI WIFN
Length:114
Mass (Da):13,127
Last modified:September 23, 2008 - v3
Checksum:i76C1162502102DD1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAA98946.3.
RefSeqiNP_506093.2. NM_073692.5.
UniGeneiCel.19520.

Genome annotation databases

EnsemblMetazoaiF23H12.1.1; F23H12.1.1; WBGene00004898.
F23H12.1.2; F23H12.1.2; WBGene00004898.
GeneIDi179692.
KEGGicel:CELE_F23H12.1.
UCSCiF23H12.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAA98946.3.
RefSeqiNP_506093.2. NM_073692.5.
UniGeneiCel.19520.

3D structure databases

ProteinModelPortaliQ19767.
SMRiQ19767. Positions 28-99.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F23H12.1.2.

Proteomic databases

EPDiQ19767.
PaxDbiQ19767.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF23H12.1.1; F23H12.1.1; WBGene00004898.
F23H12.1.2; F23H12.1.2; WBGene00004898.
GeneIDi179692.
KEGGicel:CELE_F23H12.1.
UCSCiF23H12.1. c. elegans.

Organism-specific databases

CTDi179692.
WormBaseiF23H12.1; CE42855; WBGene00004898; snb-2.

Phylogenomic databases

eggNOGiKOG0860. Eukaryota.
COG5143. LUCA.
GeneTreeiENSGT00550000074449.
InParanoidiQ19767.
OMAiYWWQNAR.
PhylomeDBiQ19767.

Miscellaneous databases

PROiQ19767.

Gene expression databases

ExpressionAtlasiQ19767. baseline.

Family and domain databases

Gene3Di1.10.3840.10. 1 hit.
InterProiIPR001388. Synaptobrevin.
IPR016444. Synaptobrevin/VAMP.
[Graphical view]
PfamiPF00957. Synaptobrevin. 1 hit.
[Graphical view]
PIRSFiPIRSF005409. Synaptobrevin_euk. 1 hit.
PRINTSiPR00219. SYNAPTOBREVN.
PROSITEiPS50892. V_SNARE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ19767_CAEEL
AccessioniPrimary (citable) accession number: Q19767
Secondary accession number(s): Q9NGU4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: September 23, 2008
Last modified: July 6, 2016
This is version 118 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.