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Protein
Submitted name:

SyNaptoBrevin related

Gene

snb-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
SyNaptoBrevin relatedImported
Gene namesi
Name:snb-2Imported
ORF Names:CELE_F23H12.1Imported, F23H12.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF23H12.1; CE42855; WBGene00004898; snb-2.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei93 – 113HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ19767.
PaxDbiQ19767.
PeptideAtlasiQ19767.

Expressioni

Gene expression databases

BgeeiWBGene00004898.
ExpressionAtlasiQ19767. baseline.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi6239.F23H12.1.2.

Structurei

3D structure databases

ProteinModelPortaliQ19767.
SMRiQ19767.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini29 – 89V-SNARE coiled-coil homologyInterPro annotationAdd BLAST61

Keywords - Domaini

Coiled coilSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG0860. Eukaryota.
COG5143. LUCA.
GeneTreeiENSGT00550000074449.
InParanoidiQ19767.
OMAiYWWQNAR.
OrthoDBiEOG091G0MPE.
PhylomeDBiQ19767.

Family and domain databases

InterProiView protein in InterPro
IPR001388. Synaptobrevin.
IPR016444. Synaptobrevin/VAMP.
PfamiView protein in Pfam
PF00957. Synaptobrevin. 1 hit.
PIRSFiPIRSF005409. Synaptobrevin_euk. 1 hit.
PRINTSiPR00219. SYNAPTOBREVN.
PROSITEiView protein in PROSITE
PS50892. V_SNARE. 1 hit.

Sequencei

Sequence statusi: Complete.

Q19767-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSANNEANKD LEAGNGEAQP PTGTYNTKRM QMAQAQVNEV IDVMRNNVNK
60 70 80 90 100
VMERDVQLNS LDHRAEVLQN GASQFQQSSR TLRQKYWWQN IRMMIIIGLI
110
AFLVIGIFLI WIFN
Length:114
Mass (Da):13,127
Last modified:September 23, 2008 - v3
Checksum:i76C1162502102DD1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAA98946.3.
RefSeqiNP_506093.2. NM_073692.5.
UniGeneiCel.19520.

Genome annotation databases

EnsemblMetazoaiF23H12.1.1; F23H12.1.1; WBGene00004898.
F23H12.1.2; F23H12.1.2; WBGene00004898.
GeneIDi179692.
KEGGicel:CELE_F23H12.1.
UCSCiF23H12.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAA98946.3.
RefSeqiNP_506093.2. NM_073692.5.
UniGeneiCel.19520.

3D structure databases

ProteinModelPortaliQ19767.
SMRiQ19767.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F23H12.1.2.

Proteomic databases

EPDiQ19767.
PaxDbiQ19767.
PeptideAtlasiQ19767.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF23H12.1.1; F23H12.1.1; WBGene00004898.
F23H12.1.2; F23H12.1.2; WBGene00004898.
GeneIDi179692.
KEGGicel:CELE_F23H12.1.
UCSCiF23H12.1. c. elegans.

Organism-specific databases

CTDi179692.
WormBaseiF23H12.1; CE42855; WBGene00004898; snb-2.

Phylogenomic databases

eggNOGiKOG0860. Eukaryota.
COG5143. LUCA.
GeneTreeiENSGT00550000074449.
InParanoidiQ19767.
OMAiYWWQNAR.
OrthoDBiEOG091G0MPE.
PhylomeDBiQ19767.

Miscellaneous databases

PROiPR:Q19767.

Gene expression databases

BgeeiWBGene00004898.
ExpressionAtlasiQ19767. baseline.

Family and domain databases

InterProiView protein in InterPro
IPR001388. Synaptobrevin.
IPR016444. Synaptobrevin/VAMP.
PfamiView protein in Pfam
PF00957. Synaptobrevin. 1 hit.
PIRSFiPIRSF005409. Synaptobrevin_euk. 1 hit.
PRINTSiPR00219. SYNAPTOBREVN.
PROSITEiView protein in PROSITE
PS50892. V_SNARE. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ19767_CAEEL
AccessioniPrimary (citable) accession number: Q19767
Secondary accession number(s): Q9NGU4
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: September 23, 2008
Last modified: April 12, 2017
This is version 125 of the entry and version 3 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.