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Protein

Histone H1.3

Gene

hil-3

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Histones H1 are necessary for the condensation of nucleosome chains into higher-order structures.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Histone H1.3
Alternative name(s):
Histone H1-like protein 3
Gene namesi
Name:hil-3
ORF Names:F22F1.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiF22F1.1; CE04443; WBGene00001854; hil-3.

Subcellular locationi

  • Nucleus PROSITE-ProRule annotation
  • Chromosome PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chromosome, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 208207Histone H1.3PRO_0000195983Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylserineCurated

Keywords - PTMi

Acetylation

Proteomic databases

EPDiQ19743.
PaxDbiQ19743.
PRIDEiQ19743.

PTM databases

iPTMnetiQ19743.

Expressioni

Gene expression databases

BgeeiWBGene00001854.

Interactioni

Protein-protein interaction databases

STRINGi6239.F22F1.1.

Structurei

3D structure databases

ProteinModelPortaliQ19743.
SMRiQ19743. Positions 37-113.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini37 – 11377H15PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the histone H1/H5 family.PROSITE-ProRule annotation
Contains 1 H15 (linker histone H1/H5 globular) domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG4012. Eukaryota.
ENOG4112541. LUCA.
GeneTreeiENSGT00730000111466.
HOGENOMiHOG000251627.
InParanoidiQ19743.
KOiK11275.
OrthoDBiEOG091G0XGD.
PhylomeDBiQ19743.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005818. Histone_H1/H5_H15.
IPR005819. Histone_H5.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00538. Linker_histone. 1 hit.
[Graphical view]
PRINTSiPR00624. HISTONEH5.
SMARTiSM00526. H15. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51504. H15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q19743-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDTVVASAA VQAPAKTVKS PKAAKTTKVP KAKKPVAHPP YINMVTAAIN
60 70 80 90 100
GLKERKGSSK IAILKYITKN YNVGDQIIKI NARLRDTLNK GVVSKALVQS
110 120 130 140 150
VGTGASGRFR VTEKKAAAAK KPVAKKAATG EKKAKKPVAQ KAATGEKKAK
160 170 180 190 200
KTTATKTKKT ADKVKKVKSP KKIAKPTAKK VAKSPAKKSA PKKAAAAKPA

KKAVAPKT
Length:208
Mass (Da):21,707
Last modified:January 23, 2007 - v3
Checksum:iCCB20FBE08A3E250
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF012253 mRNA. Translation: AAB66471.1.
FO080273 Genomic DNA. Translation: CCD62510.1.
PIRiT16138.
RefSeqiNP_509375.1. NM_076974.4.
UniGeneiCel.17950.

Genome annotation databases

EnsemblMetazoaiF22F1.1; F22F1.1; WBGene00001854.
GeneIDi181073.
KEGGicel:CELE_F22F1.1.
UCSCiF22F1.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF012253 mRNA. Translation: AAB66471.1.
FO080273 Genomic DNA. Translation: CCD62510.1.
PIRiT16138.
RefSeqiNP_509375.1. NM_076974.4.
UniGeneiCel.17950.

3D structure databases

ProteinModelPortaliQ19743.
SMRiQ19743. Positions 37-113.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F22F1.1.

PTM databases

iPTMnetiQ19743.

Proteomic databases

EPDiQ19743.
PaxDbiQ19743.
PRIDEiQ19743.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF22F1.1; F22F1.1; WBGene00001854.
GeneIDi181073.
KEGGicel:CELE_F22F1.1.
UCSCiF22F1.1. c. elegans.

Organism-specific databases

CTDi181073.
WormBaseiF22F1.1; CE04443; WBGene00001854; hil-3.

Phylogenomic databases

eggNOGiKOG4012. Eukaryota.
ENOG4112541. LUCA.
GeneTreeiENSGT00730000111466.
HOGENOMiHOG000251627.
InParanoidiQ19743.
KOiK11275.
OrthoDBiEOG091G0XGD.
PhylomeDBiQ19743.

Miscellaneous databases

PROiQ19743.

Gene expression databases

BgeeiWBGene00001854.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005818. Histone_H1/H5_H15.
IPR005819. Histone_H5.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00538. Linker_histone. 1 hit.
[Graphical view]
PRINTSiPR00624. HISTONEH5.
SMARTiSM00526. H15. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51504. H15. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiH13_CAEEL
AccessioniPrimary (citable) accession number: Q19743
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: January 23, 2007
Last modified: September 7, 2016
This is version 91 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.