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Protein
Submitted name:

Uncharacterized protein

Gene

CELE_F20D6.9

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:CELE_F20D6.9Imported, F20D6.9Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF20D6.9; CE07113; WBGene00017638.

Subcellular locationi

  • Chromosome SAAS annotation
  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

ChromosomeSAAS annotation, NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiQ19649.

Interactioni

Protein-protein interaction databases

STRINGi6239.F20D6.9.

Structurei

3D structure databases

ProteinModelPortaliQ19649.
SMRiQ19649. Positions 27-116.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini10 – 114105HistoneInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the histone H3 family.SAAS annotation

Phylogenomic databases

eggNOGiKOG1745. Eukaryota.
COG2036. LUCA.
GeneTreeiENSGT00840000129844.
HOGENOMiHOG000155290.
InParanoidiQ19649.
KOiK11253.
PhylomeDBiQ19649.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007125. Histone_H2A/H2B/H3.
IPR000164. Histone_H3/CENP-A.
[Graphical view]
PANTHERiPTHR11426. PTHR11426. 1 hit.
PfamiPF00125. Histone. 1 hit.
[Graphical view]
PRINTSiPR00622. HISTONEH3.
SMARTiSM00428. H3. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.

Sequencei

Sequence statusi: Complete.

Q19649-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGKKNLSGV CRKSCTQPVR SYPFHSGTVA LREIRKQQQS TELLIPRSRF
60 70 80 90 100
ERLVKELAQD FVTDLIFRKD AIDALQAAVE DYLVELFRLG NLCAIKCKRV
110
TIEADNLKFA RRIRGEDE
Length:118
Mass (Da):13,543
Last modified:November 1, 1996 - v1
Checksum:i304314962143CAC4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CCD68325.1.
PIRiT16118.
RefSeqiNP_505106.1. NM_072705.1.
UniGeneiCel.29297.

Genome annotation databases

EnsemblMetazoaiF20D6.9; F20D6.9; WBGene00017638.
GeneIDi184727.
KEGGicel:CELE_F20D6.9.
UCSCiF20D6.9. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CCD68325.1.
PIRiT16118.
RefSeqiNP_505106.1. NM_072705.1.
UniGeneiCel.29297.

3D structure databases

ProteinModelPortaliQ19649.
SMRiQ19649. Positions 27-116.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F20D6.9.

Proteomic databases

PaxDbiQ19649.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF20D6.9; F20D6.9; WBGene00017638.
GeneIDi184727.
KEGGicel:CELE_F20D6.9.
UCSCiF20D6.9. c. elegans.

Organism-specific databases

CTDi184727.
WormBaseiF20D6.9; CE07113; WBGene00017638.

Phylogenomic databases

eggNOGiKOG1745. Eukaryota.
COG2036. LUCA.
GeneTreeiENSGT00840000129844.
HOGENOMiHOG000155290.
InParanoidiQ19649.
KOiK11253.
PhylomeDBiQ19649.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007125. Histone_H2A/H2B/H3.
IPR000164. Histone_H3/CENP-A.
[Graphical view]
PANTHERiPTHR11426. PTHR11426. 1 hit.
PfamiPF00125. Histone. 1 hit.
[Graphical view]
PRINTSiPR00622. HISTONEH3.
SMARTiSM00428. H3. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ19649_CAEEL
AccessioniPrimary (citable) accession number: Q19649
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 124 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.