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Protein

Serpentine receptor class alpha-27

Gene

sra-27

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Serpentine receptor class alpha-27
Short name:
Protein sra-27
Gene namesi
Name:sra-27
ORF Names:F18C5.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF18C5.1; CE33523; WBGene00005053; sra-27.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei28 – 4821HelicalSequence analysisAdd
BLAST
Transmembranei67 – 8721HelicalSequence analysisAdd
BLAST
Transmembranei128 – 14821HelicalSequence analysisAdd
BLAST
Transmembranei157 – 17721HelicalSequence analysisAdd
BLAST
Transmembranei203 – 22321HelicalSequence analysisAdd
BLAST
Transmembranei252 – 27221HelicalSequence analysisAdd
BLAST
Transmembranei287 – 30721HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 344344Serpentine receptor class alpha-27PRO_0000104488Add
BLAST

Proteomic databases

PaxDbiQ19549.
PRIDEiQ19549.

Structurei

3D structure databases

ProteinModelPortaliQ19549.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410K910. Eukaryota.
ENOG4110JTN. LUCA.
GeneTreeiENSGT00840000130270.
HOGENOMiHOG000020104.
InParanoidiQ19549.
OMAiLTTKAIC.
PhylomeDBiQ19549.

Family and domain databases

InterProiIPR000344. 7TM_GPCR_serpentine_rcpt_Sra.
IPR000276. GPCR_Rhodpsn.
[Graphical view]
PfamiPF02117. 7TM_GPCR_Sra. 1 hit.
[Graphical view]
PRINTSiPR00697. TMPROTEINSRA.

Sequencei

Sequence statusi: Complete.

Q19549-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMYTNQTAE ELETWRCTSD GIFKSQNSIW MKINFVFVFI LIFLTFYLSF
60 70 80 90 100
KAARVLKNHN VYSKGSQILL MITLLNANLN QLIFLEIRIR HLVHIFINSE
110 120 130 140 150
DPCKIEFHSP ECTYDQTIYA FTSVMSTGLL SALTFDRFFA LYASTVYVRN
160 170 180 190 200
SKDSAYMLIT VSIIVTVIVH IRTYGGVSRA GYVPSCTYPP QLSLNTYQVV
210 220 230 240 250
NNAIFWIIMA NCVLTIAVLL LNIYKDKRIK KSVFDTKTRY NSFENVLTTK
260 270 280 290 300
AICSVTSTQF VFLSFSTAAL AIIRTLEAGM SEEVFHINIQ YINGGVYGNL
310 320 330 340
SIPVLIYLKT NQCILQRRKS IDKMTNHTGT VDSHISSLKT AWET
Length:344
Mass (Da):39,207
Last modified:October 1, 2003 - v2
Checksum:iE32A3D58B415AF98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080970 Genomic DNA. Translation: CCD68192.1.
PIRiT16090.
RefSeqiNP_495328.2. NM_062927.2.
UniGeneiCel.26476.

Genome annotation databases

EnsemblMetazoaiF18C5.1; F18C5.1; WBGene00005053.
GeneIDi184633.
KEGGicel:CELE_F18C5.1.
UCSCiF18C5.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080970 Genomic DNA. Translation: CCD68192.1.
PIRiT16090.
RefSeqiNP_495328.2. NM_062927.2.
UniGeneiCel.26476.

3D structure databases

ProteinModelPortaliQ19549.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ19549.
PRIDEiQ19549.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF18C5.1; F18C5.1; WBGene00005053.
GeneIDi184633.
KEGGicel:CELE_F18C5.1.
UCSCiF18C5.1. c. elegans.

Organism-specific databases

CTDi184633.
WormBaseiF18C5.1; CE33523; WBGene00005053; sra-27.

Phylogenomic databases

eggNOGiENOG410K910. Eukaryota.
ENOG4110JTN. LUCA.
GeneTreeiENSGT00840000130270.
HOGENOMiHOG000020104.
InParanoidiQ19549.
OMAiLTTKAIC.
PhylomeDBiQ19549.

Miscellaneous databases

NextBioi925466.
PROiQ19549.

Family and domain databases

InterProiIPR000344. 7TM_GPCR_serpentine_rcpt_Sra.
IPR000276. GPCR_Rhodpsn.
[Graphical view]
PfamiPF02117. 7TM_GPCR_Sra. 1 hit.
[Graphical view]
PRINTSiPR00697. TMPROTEINSRA.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiSRA27_CAEEL
AccessioniPrimary (citable) accession number: Q19549
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2005
Last sequence update: October 1, 2003
Last modified: May 11, 2016
This is version 93 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.