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Unreviewed, UniProtKB/TrEMBL Q19482 (Q19482_CAEEL)

Last modified February 9, 2010. Version 86. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesSubmitted name:
    Protein F15B9.7, confirmed by transcript evidence EMBL CAB01449.3
Submitted name:
    Flamingo-like protein FMI-1 EMBL AAQ84880.1
Gene names
Name: cdh-6 WormBase WBGene00000398 WormPep F15B9.7
Synonyms: fmi-1 EMBL CAB01449.3
ORF Names: F15B9.7 EMBL CAB01449.3 WormPep F15B9.7
OrganismCaenorhabditis elegans [Complete proteome] EMBL CAB01449.3
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length2596 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 1 GPS domain.

Sequences

Sequence LengthMass (Da)Tools
Q19482-1 [UniParc].

Last modified April 29, 2008. Version 4.
Checksum: 659A425FDD3C73BC

FASTA2,596288,351
        10         20         30         40         50         60 
MMLDRIMFLL FFILSLVIGS FSEYLDDKYY STNSIDVVCK PCAVPSSNSV IWLPASRPPC 

        70         80         90        100        110        120 
LHPGQPIIHW PDLSDNLACP VPGLPDSVHS SQISLLEGEG LLLTKERICF FDGPIDFHYD 

       130        140        150        160        170        180 
YVCDGKLYRS KMRIGHSIAS KKKLETRRTK RWARRRNPDA NAVHFQQEKY VKELPEDTPI 

       190        200        210        220        230        240 
ETIIASVKAS HASSQPLYYS MVAPQDSRSQ NLFTLDTMSG EIRLAKSMDR EVLDKHILKV 

       250        260        270        280        290        300 
TAYERVDPTI SASTTVVVHV LDVQDNSPIF EKDSYFGEIR EDAPIGTTVL SVFARDLDSG 

       310        320        330        340        350        360 
ENGEIEYSLG EGNGKNLLAI NAKSGVIQTA APLDRETLSL IRLDVIASDK GTPKRESTAM 

       370        380        390        400        410        420 
VEITVVDVND NAPVFASDSY NVTILENITI PAVIATVKAT DEDFGTNGKV HYSMASSSGI 

       430        440        450        460        470        480 
GGLTIDYSTG EVTLRERIDA KNSPITAVIR AKDGAQPALS STVPLTINVI DINDHAPTLI 

       490        500        510        520        530        540 
AAQKMITLEE NVAIGEEVGR VYAIDEDSGP NGIIKYSMEG SEDFIIDEDS GLIKTTKLLD 

       550        560        570        580        590        600 
RETTARYSLK VTARDMGTPS LNTSTTIAVV LKDINDNAPT FDKKEYNVTI SEEMPRGSQI 

       610        620        630        640        650        660 
ITLKAVDNDE DQKITYRIEE ADREVFSILD IGDQGAILSV SGELKRQDHK VRVEISATDQ 

       670        680        690        700        710        720 
GGLQGRCVVN VFIDDVNSAP YFNDHPFSVK IPEHSPIGYP VITLKAEDHD RGDNARIVYS 

       730        740        750        760        770        780 
IDSSQFFRID PSSGDISVSS DLDREDRATF SVIVTASDHA SPPLNTSTQI EVILDDINDN 

       790        800        810        820        830        840 
SPQFTSSSYA ATISEDIPVG TSFLQVSAID ADIGPNGIVD YFLNESSSSP SIQLFRLDRT 

       850        860        870        880        890        900 
SGTLRVSSKL DREQFAVIVL PIFARDRGTP SLSAASEITL TLSDVNDNAP TFEQLSYDLY 

       910        920        930        940        950        960 
IAENSPVGST VGTIVARDAD EGDNADISFR IFGGADAKLF DIEEDAEQNG VVRILTRAEF 

       970        980        990       1000       1010       1020 
DYEAKANKFF FELQASSGQL SSTVPVRIHV SDVNDNKPAL KDFVILMNRF DNVQMARQIG 

      1030       1040       1050       1060       1070       1080 
FIPAFDPDQN ATLEYFLEEN DLIEAEKYTG KILVKQEWKR NMDVSFKTCV SDGANTECST 

      1090       1100       1110       1120       1130       1140 
CRFIHVLVEP EWLSESFTLS LARMTVDDFW DPLVFQRFRD AMSTLSNWKP SDIHVIGVKQ 

      1150       1160       1170       1180       1190       1200 
HLDDVIYINI AITDHGRVVR GWRAIELVKE SIKKLEKMTL LQVEVIRDES CANEPCSHMA 

      1210       1220       1230       1240       1250       1260 
KCRQTQKFVG EMKAHETDNF IARTLNTVNT FVCECPSGFT SSGAHGDCDT RIDECYRGRC 

      1270       1280       1290       1300       1310       1320 
SNNSTCVAFE NTYQCECKPG WIGRHCEISV HALTCVPGYC MSDSLCELDG NQMKCRHCKY 

      1330       1340       1350       1360       1370       1380 
HGEDTDERCR LRSVSFDGEG LLNVNLDLPR TQWTMKFRVS TIAHNGVLVF TGDKRSDFVE 

      1390       1400       1410       1420       1430       1440 
VSVVDRVLKV QFSLGGEKID AKMENDVENR INDGEWHTVA LEYSNKQITM SLDDCETNPS 

      1450       1460       1470       1480       1490       1500 
LLLNTSPNCA IRAKLNLEKK CEDPTVPCYR YLDISNGLFL GGRPGTSKQI EKAFSGCISD 

      1510       1520       1530       1540       1550       1560 
LSVDKEDVDF STIKEMHKVG QVHEGCKHRK DFCSTSDGQC SATSKCVNRW GGRICSCPQS 

      1570       1580       1590       1600       1610       1620 
VHSTGECVGA LGTQDLRGHS LFEEESFVLY QPSQVSVPFE VSFEFRTSRA DMQVFALEFT 

      1630       1640       1650       1660       1670       1680 
QRSVHYNLEV DDGTLKYNIG DSEVELPAPE VTSKHWMNVV IKFEADSVAT SINGIYSAEA 

      1690       1700       1710       1720       1730       1740 
KASISDMNLE SLYFGIAPGT GHPSRFEGCI RNVLVDGRSI SVKKKGKTRA GCVVPNRCSV 

      1750       1760       1770       1780       1790       1800 
DSICPAESTC HRAWNKHKCK CHKSFVGDTC LPVCSVANVC SSGTCVSSNT TAGYECICPA 

      1810       1820       1830       1840       1850       1860 
GKTGKNCQLE APKQMCPSGW WGTFPRCRRC SCAQTKDYEA QCDKKTGACQ CKKSHFSTIN 

      1870       1880       1890       1900       1910       1920 
GCVKCECGFG ADSTECSADG HCKCNGDAVG RRCDRCSRFD HQLDSKTLKC RPVSGKCPSE 

      1930       1940       1950       1960       1970       1980 
IEYSIQWPAS QKGSIVRQSC PVGESGLATR KCLETGRWSD VNAWNCTRPE YSIMVNKFEI 

      1990       2000       2010       2020       2030       2040 
LEPSKLLTMV ANATNTESSI RGRNQQIAAE ALSRLVDYEQ SMPMKGRAHI KDMKFTEKLI 

      2050       2060       2070       2080       2090       2100 
ESLGRVMSEQ PADEYSTLIS KLWNYAETVA EIHENVNFLS PFFVANDHIV FASDKLDFGN 

      2110       2120       2130       2140       2150       2160 
ILPKFNNFVD LRPTGFPRVR AIVTGTTQVV YSIVPYPRCN RCENPMIAIV ANTSDPVIVE 

      2170       2180       2190       2200       2210       2220 
FEIEEDDGWK YPECVRFDEK SGTWTARGAA LIGLNLTHAA CEYNRIGVFT MFVNDQSSSI 

      2230       2240       2250       2260       2270       2280 
VRVAQMDNMT SPAIAGVALF LCFLSILLTL SRRSLKTHSV RIGFILFFAI NILNLFFVHK 

      2290       2300       2310       2320       2330       2340 
TAINQAYCPV RNAMLSFTSS APFAWLFLYG LYIYRMLADG SSSPSLTTSL LVGIVFPCLI 

      2350       2360       2370       2380       2390       2400 
SFTTFFVTDQ CSLSPHLWLF WCIILPIGLF LLLSFYAAAT SVLVSLHKKY DVFVAKYNVK 

      2410       2420       2430       2440       2450       2460 
RAVFQHFILT IFTLGMTLTG LFANQLPLPM EIMEISQSII YLIAALVIFL WCVCDITTKA 

      2470       2480       2490       2500       2510       2520 
SDSNPSMWLD NQKSVMAEST MADPQCASPL LSPRHQHHEV PMDSEWVPDV NPSNHYHTSI 

      2530       2540       2550       2560       2570       2580 
NEPDTPRRLL LPQNRDVINI LSSPDQILNE GVGHVYRNNM GSLPRLRSAQ DEADDAYYTY 

      2590 
TASRKYKNTT STFNRE 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
[2]"Molecular and Evolutionary Characterization of family B G-protein coupled receptors in Caenorhabditis elegans."
Mastwal S.S., Yu D., Hedgecock E.M.
Submitted (SEP-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AY314773 mRNA. Translation: AAQ84880.1.
Z78013, Z78018 Genomic DNA. Translation: CAB01427.3.
Z78018, Z78013 Genomic DNA. Translation: CAB01449.3.
RefSeqNP_506256.3.
UniGeneCel.4076

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGQ19482.

Genome annotation databases

EnsemblF15B9.7; F15B9.7; F15B9.7; Caenorhabditis elegans. [Genome view]
GeneID179788.
KEGGcel:F15B9.7.
NMPDRfig|6239.3.peg.20182.
UCSCF15B9.7. c. elegans.

Organism-specific databases

CTD179788.
WormBaseWBGene00000398. cdh-6.
WormPepF15B9.7. CE42459. [WorfDB]

Phylogenomic databases

eggNOGmeNOG04518.
HOGENOMHBG385872.
InParanoidQ19482.

Gene expression databases

ArrayExpressQ19482.

Family and domain databases

InterProIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR008985. ConA-like_lec_gl.
IPR013320. ConA-like_subgrp.
IPR006210. EGF-like.
IPR013032. EGF-like_reg_CS.
IPR000742. EGF_3.
IPR001881. EGF_Ca_bd.
IPR001879. GPCR_2_extracellular_dom.
IPR000203. GPS_dom.
IPR001791. Laminin_G.
IPR012680. Laminin_G_2.
[Graphical view]
Gene3DG3DSA:2.60.40.60. Cadherin. 8 hits.
G3DSA:2.60.120.200. ConA_like_subgrp. 2 hits.
PfamPF00028. Cadherin. 8 hits.
PF02210. Laminin_G_2. 2 hits.
[Graphical view]
PRINTSPR00205. CADHERIN.
SMARTSM00112. CA. 8 hits.
SM00181. EGF. 3 hits.
SM00179. EGF_CA. 1 hit.
SM00303. GPS. 1 hit.
SM00008. HormR. 1 hit.
SM00282. LamG. 2 hits.
[Graphical view]
PROSITEPS00232. CADHERIN_1. 6 hits.
PS50268. CADHERIN_2. 8 hits.
PS00022. EGF_1. 4 hits.
PS01186. EGF_2. 2 hits.
PS50026. EGF_3. 4 hits.
PS50227. G_PROTEIN_RECEP_F2_3. 1 hit.
PS50221. GPS. 1 hit.
PS50025. LAM_G_DOMAIN. 2 hits.
[Graphical view]
ProtoNetSearch...

Other Resources

NextBio906860.

Entry information

Entry nameQ19482_CAEEL
AccessionPrimary (citable) accession number: Q19482
Secondary accession number(s): Q23218, Q6W3C6
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: April 29, 2008
Last modified: February 9, 2010
This is version 86 of the entry and version 4 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information