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Protein
Submitted name:

Uncharacterized protein

Gene

CELE_F13H8.2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
SignaLinkiQ19433.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:CELE_F13H8.2Imported, F13H8.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF13H8.2; CE27127; WBGene00017435.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiQ19433.
PaxDbiQ19433.
PRIDEiQ19433.

Expressioni

Gene expression databases

BgeeiWBGene00017435.

Interactioni

Protein-protein interaction databases

DIPiDIP-25827N.
MINTiMINT-1128581.
STRINGi6239.F13H8.2.

Structurei

3D structure databases

ProteinModelPortaliQ19433.
SMRiQ19433. Positions 30-238, 407-705.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini34 – 708675WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0306. Eukaryota.
ENOG410XR1C. LUCA.
GeneTreeiENSGT00830000128374.
HOGENOMiHOG000212524.
InParanoidiQ19433.
KOiK14556.
OMAiXSFDLIH.
OrthoDBiEOG091G023R.
PhylomeDBiQ19433.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR007148. SSU_processome_Utp12.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF04003. Utp12. 1 hit.
PF00400. WD40. 7 hits.
[Graphical view]
SMARTiSM00320. WD40. 12 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 3 hits.
PROSITEiPS50082. WD_REPEATS_2. 6 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q19433-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLTKDYLKY EHAGSCGCVG SANGQLVAID GQTVAVSANE YLNFYNMRTA
60 70 80 90 100
EKVNEIIEST KPISCVRQCE NKPLLAIGYA DGSVKLFNQE NEDSEPIMFS
110 120 130 140 150
GHKKAVNCIE FSSDGLLFAT GGKDGVIVLW DILAERGMFR LHGHKESVTQ
160 170 180 190 200
MKFVRGDRFI ISTSKDSLIK FWSIASQSCF YTVMDSRNEI YSMSLHRDET
210 220 230 240 250
VLVAATAELE LLVFELNWKN GAIFEQEVKS EEPSAKKATN DDEKEDDVLA
260 270 280 290 300
NMANRYITTK LRGRVIRQSK GRALQLVATH DDRFLVCVGA DKVADVYRVF
310 320 330 340 350
SETESAKRLT KKLKSAKRKA TSDTTTVNED DVAKDVTILV TRIGEMVLPH
360 370 380 390 400
KIKWIDVVRS VKTNENTLIY KWYALLTDNT VHWVKMSIET TSNSVECDSV
410 420 430 440 450
GNLDKLGHRE DVRALCVSSS SSLLASGGGN EVIVWSTHSL RSSLTLTDND
460 470 480 490 500
IKDIVAVNFV PGDNYILTGG KNGEIGVFEL SSAELVETRK AHTGAIWTIQ
510 520 530 540 550
NSPDNEGFIT ASADKTVRFW SFVLVTEGSR KRISIKEQKV LELPDEALAA
560 570 580 590 600
SFSADGKFLV VALLNNTCSV YFVNTLKFFV SLYGHSLPVT CVDIAPSSKL
610 620 630 640 650
CVTGSVDKSV KVWGLDFGDC HKSFHAHDDA VTSVLFCPGE EQLFWSAGKD
660 670 680 690 700
GKIKQWDAVK FIMVQVLDRH TLDIRCLAQF TNGSVMFSAS HDKSIRCWEK
710 720 730 740 750
TDEILIVEER EEVEREEEYE KKLIEEEDVV AGENADNEAG VASSKTSSSV
760 770 780 790 800
VSAENIIQAV DIARNEKVQR QEDPGHEPHP LIGAYNSKSL DHFIVDVVAK
810 820 830 840 850
CRASDLDRTL LLVPLSYVAD ILLAISSCTQ QQYKAELCTH VAVYLTRIHL
860 870 880 890 900
SHITASSDYV PIFEQMKSKM SEGVEKLRNV TGINLAALRL LATELEDREQ
910 920
VKKFAQIELG VEDPKKKRKG RKAVLKTLA
Length:929
Mass (Da):103,224
Last modified:June 1, 2001 - v2
Checksum:i2E0082E54E35B0A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD66044.1.
RefSeqiNP_495256.1. NM_062855.4.
UniGeneiCel.5867.

Genome annotation databases

EnsemblMetazoaiF13H8.2; F13H8.2; WBGene00017435.
GeneIDi174038.
KEGGicel:CELE_F13H8.2.
UCSCiF13H8.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD66044.1.
RefSeqiNP_495256.1. NM_062855.4.
UniGeneiCel.5867.

3D structure databases

ProteinModelPortaliQ19433.
SMRiQ19433. Positions 30-238, 407-705.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25827N.
MINTiMINT-1128581.
STRINGi6239.F13H8.2.

Proteomic databases

EPDiQ19433.
PaxDbiQ19433.
PRIDEiQ19433.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF13H8.2; F13H8.2; WBGene00017435.
GeneIDi174038.
KEGGicel:CELE_F13H8.2.
UCSCiF13H8.2. c. elegans.

Organism-specific databases

CTDi174038.
WormBaseiF13H8.2; CE27127; WBGene00017435.

Phylogenomic databases

eggNOGiKOG0306. Eukaryota.
ENOG410XR1C. LUCA.
GeneTreeiENSGT00830000128374.
HOGENOMiHOG000212524.
InParanoidiQ19433.
KOiK14556.
OMAiXSFDLIH.
OrthoDBiEOG091G023R.
PhylomeDBiQ19433.

Enzyme and pathway databases

ReactomeiR-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
SignaLinkiQ19433.

Gene expression databases

BgeeiWBGene00017435.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR007148. SSU_processome_Utp12.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF04003. Utp12. 1 hit.
PF00400. WD40. 7 hits.
[Graphical view]
SMARTiSM00320. WD40. 12 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 3 hits.
PROSITEiPS50082. WD_REPEATS_2. 6 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ19433_CAEEL
AccessioniPrimary (citable) accession number: Q19433
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: June 1, 2001
Last modified: September 7, 2016
This is version 143 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.