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Protein
Submitted name:

SCAVenger receptor (CD36 family) related

Gene

scav-4

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
SCAVenger receptor (CD36 family) relatedImported
Gene namesi
Name:scav-4Imported
ORF Names:CELE_F11C1.3Imported, F11C1.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiF11C1.3; CE33994; WBGene00008692; scav-4.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei512 – 53625HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ19344.
PaxDbiQ19344.
PRIDEiQ19344.

Interactioni

Protein-protein interaction databases

STRINGi6239.F11C1.3.

Structurei

3D structure databases

ProteinModelPortaliQ19344.
SMRiQ19344. Positions 57-466.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CD36 family.SAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG3776. Eukaryota.
ENOG410XS17. LUCA.
GeneTreeiENSGT00530000062927.
HOGENOMiHOG000021005.
InParanoidiQ19344.
OMAiFPIAIFQ.
OrthoDBiEOG7PCJGM.
PhylomeDBiQ19344.

Family and domain databases

InterProiIPR002159. CD36_fam.
[Graphical view]
PANTHERiPTHR11923. PTHR11923. 2 hits.
PfamiPF01130. CD36. 1 hit.
[Graphical view]
PRINTSiPR01609. CD36FAMILY.

Sequencei

Sequence statusi: Complete.

Q19344-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLFVAIILA AVILLVFALG IFLLIPFPIA IFQSIVDSQV YLQQKSDGQL
60 70 80 90 100
PTGTFYWSKI PAVQIWTFHL FNVTNPDEVL YYGATPNMLE IGPYTYTETE
110 120 130 140 150
FKDFTQFRDN DNEIFYVNNK TWVYDPTRSC EDCKLSDSVQ FANTAYMSTV
160 170 180 190 200
FMQIYQPAGP IVGFGLDVLT ILLGEQPLRT VTAGGTLFDG YNDPLITLIN
210 220 230 240 250
SPLVKVLLSV LGNPVQLPQV PAAGFFPHYS HTCDGNYTIR TGKDNTDYVG
260 270 280 290 300
QIKTWNGLTH LPWWKTEDTS DLRGTCDGTI QKPGIQKTDT VVQFQSFLCR
310 320 330 340 350
KYNLHYHESK TVNSIPTYGF KVEDDSYDAI KNPGYRYENF EKVNYFPNWP
360 370 380 390 400
CGLNHTKQNN GNCALVDCNQ YDNFCNACCD GSHVNGTYVM PPGMVPQRCL
410 420 430 440 450
PGQMVPTPFG AILSAPHFYG APKVVTESMV GIHPDPELHR PGTFYINPAT
460 470 480 490 500
GSTIGGEFRM MLSIPVFQSL AWTLMSNAPN AIMPSFTLTI GVVMKDYAVN
510 520 530 540 550
YIYFNTVTIP NIVLGLGIGF TAVSLIAVLL WGFCYFRSKR NAKPFVLQQH
560
RTEPTWSVAE
Length:560
Mass (Da):62,775
Last modified:October 1, 2003 - v2
Checksum:i81ADF58773CEDC19
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CAA91027.2.
PIRiT20763.
RefSeqiNP_510157.2. NM_077756.3.
UniGeneiCel.11015.

Genome annotation databases

EnsemblMetazoaiF11C1.3; F11C1.3; WBGene00008692.
GeneIDi181429.
KEGGicel:CELE_F11C1.3.
UCSCiF11C1.3. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CAA91027.2.
PIRiT20763.
RefSeqiNP_510157.2. NM_077756.3.
UniGeneiCel.11015.

3D structure databases

ProteinModelPortaliQ19344.
SMRiQ19344. Positions 57-466.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F11C1.3.

Proteomic databases

EPDiQ19344.
PaxDbiQ19344.
PRIDEiQ19344.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF11C1.3; F11C1.3; WBGene00008692.
GeneIDi181429.
KEGGicel:CELE_F11C1.3.
UCSCiF11C1.3. c. elegans.

Organism-specific databases

CTDi181429.
WormBaseiF11C1.3; CE33994; WBGene00008692; scav-4.

Phylogenomic databases

eggNOGiKOG3776. Eukaryota.
ENOG410XS17. LUCA.
GeneTreeiENSGT00530000062927.
HOGENOMiHOG000021005.
InParanoidiQ19344.
OMAiFPIAIFQ.
OrthoDBiEOG7PCJGM.
PhylomeDBiQ19344.

Miscellaneous databases

NextBioi913904.

Family and domain databases

InterProiIPR002159. CD36_fam.
[Graphical view]
PANTHERiPTHR11923. PTHR11923. 2 hits.
PfamiPF01130. CD36. 1 hit.
[Graphical view]
PRINTSiPR01609. CD36FAMILY.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ19344_CAEEL
AccessioniPrimary (citable) accession number: Q19344
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: October 1, 2003
Last modified: May 11, 2016
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.