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Protein
Submitted name:

ELRR (Extracellular Leucine-Rich Repeat) ONly

Gene

lron-5

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
ELRR (Extracellular Leucine-Rich Repeat) ONlyImported
Gene namesi
Name:lron-5Imported
ORF Names:CELE_F10F2.4Imported, F10F2.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiF10F2.4; CE31471; WBGene00008656; lron-5.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei608 – 63326HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1818Sequence analysisAdd
BLAST
Chaini19 – 656638Sequence analysisPRO_5004187063Add
BLAST

Proteomic databases

PaxDbiQ19312.

Interactioni

Protein-protein interaction databases

IntActiQ19312. 1 interaction.
STRINGi6239.F10F2.4.

Structurei

3D structure databases

ProteinModelPortaliQ19312.
SMRiQ19312. Positions 22-563.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini553 – 60250LRRCTInterPro annotationAdd
BLAST

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG4641. Eukaryota.
COG4886. LUCA.
HOGENOMiHOG000021358.
InParanoidiQ19312.
OMAiNTISHLD.
OrthoDBiEOG79CXZM.
PhylomeDBiQ19312.

Family and domain databases

Gene3Di3.80.10.10. 2 hits.
InterProiIPR000483. Cys-rich_flank_reg_C.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 2 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 7 hits.
SM00082. LRRCT. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 4 hits.
PROSITEiPS51450. LRR. 9 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q19312-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHILIILLFT SIISSIQADL CAHCDCDFIS HTVVCNRPSL LIRTVSMLPT
60 70 80 90 100
IRQLHLNSLN LPQPPHFLFH PNLRVLRMSR CGMHEIPGST FLPLPGLEVI
110 120 130 140 150
DLSNNHLETL PPTVLRSLKF LRVLILSNNR LSNLDQLTWI LAPGVVLEQL
160 170 180 190 200
DLSGNPIAIA TSMTVFPPVR QLFLSDTRME SVNETAIMFK KLPGKCDRDV
210 220 230 240 250
CRHIPIHNLN VSIITTIDFS SNRDLEIDSG ALDVFSNATY VDLSNTRLPV
260 270 280 290 300
GFEEWLERKS RVKSLNISHC QLPLHEDTWT ACGQFLHSLD ISGIGAKRLR
310 320 330 340 350
FSRFCPIRSV FARDNLISSV YIDAVSMESL HLERNMFSEF PIPPPGVELT
360 370 380 390 400
ELHTLGLSHN LMTSLPPHAL QSYPNLQHFD VSSNQLSEID PQAFPSIGLG
410 420 430 440 450
LISLDLSSNQ LSSLPHPILP SLLLLDLSFN TISHLDPHFF TGLPMLQQLR
460 470 480 490 500
IASNPTLFSR CPNRDSPCWS DHLDELTSLV DLDISNSGLE FSLHWRHLRT
510 520 530 540 550
LKSLILRGNE IRIIDSKSLP ENLRTLDLGE NRVQFTSNFS KLEHLRDLRV
560 570 580 590 600
DQNPLRCDCS LYDIVPHLLN QSQISDPLLY YCFSGSWQYP LLPYLASVKP
610 620 630 640 650
CVDTTRNFYS ILITTFIIAF AIVAGLIGGF LVYRKYADRA NFVYKRISLM

ESPVRL
Length:656
Mass (Da):74,172
Last modified:October 1, 2002 - v2
Checksum:i4C8DBB2407AB90FD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CAA84651.2.
PIRiT20713.
RefSeqiNP_497943.2. NM_065542.4.
UniGeneiCel.19968.

Genome annotation databases

EnsemblMetazoaiF10F2.4; F10F2.4; WBGene00008656.
GeneIDi184307.
KEGGicel:CELE_F10F2.4.
UCSCiF10F2.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284603 Genomic DNA. Translation: CAA84651.2.
PIRiT20713.
RefSeqiNP_497943.2. NM_065542.4.
UniGeneiCel.19968.

3D structure databases

ProteinModelPortaliQ19312.
SMRiQ19312. Positions 22-563.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ19312. 1 interaction.
STRINGi6239.F10F2.4.

Proteomic databases

PaxDbiQ19312.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF10F2.4; F10F2.4; WBGene00008656.
GeneIDi184307.
KEGGicel:CELE_F10F2.4.
UCSCiF10F2.4. c. elegans.

Organism-specific databases

CTDi184307.
WormBaseiF10F2.4; CE31471; WBGene00008656; lron-5.

Phylogenomic databases

eggNOGiKOG4641. Eukaryota.
COG4886. LUCA.
HOGENOMiHOG000021358.
InParanoidiQ19312.
OMAiNTISHLD.
OrthoDBiEOG79CXZM.
PhylomeDBiQ19312.

Family and domain databases

Gene3Di3.80.10.10. 2 hits.
InterProiIPR000483. Cys-rich_flank_reg_C.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 2 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 7 hits.
SM00082. LRRCT. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 4 hits.
PROSITEiPS51450. LRR. 9 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ19312_CAEEL
AccessioniPrimary (citable) accession number: Q19312
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: October 1, 2002
Last modified: June 8, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.