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Protein
Submitted name:

Small Nuclear RibonucleoProtein homolog

Gene

snrp-40.1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Enzyme and pathway databases

ReactomeiR-CEL-72163. mRNA Splicing - Major Pathway.
R-CEL-72165. mRNA Splicing - Minor Pathway.
SignaLinkiQ19211.

Names & Taxonomyi

Protein namesi
Submitted name:
Small Nuclear RibonucleoProtein homologImported
Gene namesi
Name:snrp-40.1Imported
ORF Names:CELE_F08G12.2Imported, F08G12.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiF08G12.2; CE18578; WBGene00008586; snrp-40.1.

Subcellular locationi

Keywords - Cellular componenti

Virion

PTM / Processingi

Proteomic databases

EPDiQ19211.
PaxDbiQ19211.
PeptideAtlasiQ19211.

Expressioni

Gene expression databases

BgeeiWBGene00008586.

Interactioni

Protein-protein interaction databases

DIPiDIP-25377N.
IntActiQ19211. 4 interactors.
MINTiMINT-1067612.
STRINGi6239.F08G12.2.

Structurei

3D structure databases

ProteinModelPortaliQ19211.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini34 – 331WD_REPEATS_REGIONInterPro annotationAdd BLAST298
Repeati34 – 67WDPROSITE-ProRule annotationAdd BLAST34
Repeati77 – 118WDPROSITE-ProRule annotationAdd BLAST42
Repeati169 – 202WDPROSITE-ProRule annotationAdd BLAST34
Repeati203 – 237WDPROSITE-ProRule annotationAdd BLAST35
Repeati295 – 331WDPROSITE-ProRule annotationAdd BLAST37

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0265. Eukaryota.
ENOG410XSEW. LUCA.
GeneTreeiENSGT00810000125363.
HOGENOMiHOG000091644.
InParanoidiQ19211.
KOiK12857.
OMAiGDCENYG.
OrthoDBiEOG091G0DR4.
PhylomeDBiQ19211.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiView protein in InterPro
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
PfamiView protein in Pfam
PF00400. WD40. 7 hits.
PRINTSiPR00320. GPROTEINBRPT.
SMARTiView protein in SMART
SM00320. WD40. 7 hits.
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 4 hits.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Complete.

Q19211-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALVTSSGQQ LVSSGFPQQT AQRFSNLMAP TMVLLGHEGE IYTGAFSPDG
60 70 80 90 100
TCLATSGYDQ KIFFWNVYGE CENFSTIKGH SGAVMDLKFT TDSSSLVSCG
110 120 130 140 150
TDKSVRVWDM ETGTCARRFR THTDFVNAVH PSRRGVTLVA SASDDGTCRV
160 170 180 190 200
HDMRTKEPVK TYTNRYQQTA VTFNDSSDQV ISGGIDNVLK VWDMRRDEIT
210 220 230 240 250
YTLTGHRDTI TGISLSPSGK FIISNSMDCT VRQWDIRPFV PGQRSVGVFA
260 270 280 290 300
GHNHNFEKNL LKCSWSPCER FITAGSSDRF LYVWETLSKK IVYKLPGHMG
310 320 330
SVNCTDFHPK EPIMLSCGSD KRVFLGEIDM S
Length:331
Mass (Da):36,822
Last modified:November 1, 1998 - v2
Checksum:iE537B19EC9180F91
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA. Translation: CAA91460.1.
PIRiT20593.
RefSeqiNP_509886.1. NM_077485.5.
UniGeneiCel.11041.

Genome annotation databases

EnsemblMetazoaiF08G12.2; F08G12.2; WBGene00008586.
GeneIDi181319.
KEGGicel:CELE_F08G12.2.
UCSCiF08G12.2. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiQ19211_CAEEL
AccessioniPrimary (citable) accession number: Q19211
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1998
Last modified: September 27, 2017
This is version 146 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported