Q19194 (Q19194_CAEEL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein CDH-5, isoform a EMBL CCD67647.1

Gene names

Name:	cdh-5 WormBase F08B4.2a
ORF Names:	F08B4.2 EMBL CCD67647.1

Organism

Caenorhabditis elegans

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	1544 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Biological process	Cell adhesion SAAS SAAS020894
Cellular component	Membrane
Domain	Repeat SAAS SAAS020894 Transmembrane SAAS SAAS020894
Ligand	Calcium SAAS SAAS020894
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	homophilic cell adhesion Inferred from electronic annotation. Source: InterPro
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: InterPro
Molecular function	calcium ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q19194 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: 8A0A3B97E600020B	FASTA	1,544	167,895
	10 20 30 40 50 60 MGTTVRVSPN SQSESLQILV NDEDLQPGMP PATYQYILTG LGATIFAVDQ RGFVYLNVPK 70 80 90 100 110 120 IDADPPNPST YQLNVEAREV NTVPTRRSEP VTITIHILDI NDNSPQFEQP IYMANTTASG 130 140 150 160 170 180 DERDVVKVVA TDVDSGAFGQ VTYTIAQVTN GGEDKFRYET ATNMLVATGN LVPGERYQVV 190 200 210 220 230 240 IEAIDGGGRS SQAIVIVLAL DPMHQTFSSL APLPGMETFM PNPLAMATTP GTMVTSAESE 250 260 270 280 290 300 ETIQTFVTEV NENTPPNTVV VSLGDESSRE LTYFNVVGGN EEGKFAIDDA GTIVTAEELD 310 320 330 340 350 360 REKTAMYSLQ VETRSRNPDQ HLYWTLVQVT VMDVNDNAPT FTDPQPIRLR LSIDDIEQLT 370 380 390 400 410 420 GNMIIGRIGV EDADADDNGR LELRIMPPHN KLFAISNDGI LSVNGDFTAA HFGEHDLTVV 430 440 450 460 470 480 ARDHGEPSLE TRARVQISIF GTLITMATVA PTNEVFEYTS SVEEEPQTTN PDEHLQTVTT 490 500 510 520 530 540 SPSTKNQVSQ QIFSSFPAPQ VEQTGAPVEP EFPQFPTFPT LSPHPQIDEE TEEDEEVTDE 550 560 570 580 590 600 YPDTVATVPT VTVAPDYSEE YGQEASSSSS TILPDVQGVW SEISELPSEN PITYTESPIT 610 620 630 640 650 660 ESTAPAPETS PETAPEITPE RGSSAENELY PTEIAPENVE KPTELAPDLS ETTENTENQW 670 680 690 700 710 720 LPDVVETSQV ELPSLPTTKM APPQPVPTQS PPLPTPKRLA PVFKPSQITV QIDENESQVE 730 740 750 760 770 780 ITKAHATYPD GLSGTITYVL HKGDPSLFSV SSYSGSVNLL RALDAETNST VTIQISTSEA 790 800 810 820 830 840 QTLEVDPKLA HFVSITINVA DKNDWIPNFE SASYEFDVKE DTLPGTIVGQ VNAFDQDRDE 850 860 870 880 890 900 PNNRIRYRLL SAGGLEAHFN VNAESGLITL ARPIDAFAGE KITLRIEGAD SGMLPLSSTT 910 920 930 940 950 960 TVLINVVATS SHLIPDASPV SNTPNEGELQ FSLRNYTASV SEAVRPPHLV QVLSVMNKPT 970 980 990 1000 1010 1020 DTRFIICNII SGNYRGAFGI TAGNDGNCEL RTQMELDRET VERYLLNITV TAGAQTDYAL 1030 1040 1050 1060 1070 1080 VSITVLDVND NVPRFVYDSD LGLTTYFGAV SSVANAFTRV LTVKAEDADL GNSSLVNYAL 1090 1100 1110 1120 1130 1140 DPLSAHSKYF SISPFGEIST KQSMSTILSR NRLQFFEFRV SACDSPISGQ QLCSKADVVV 1150 1160 1170 1180 1190 1200 NVIGSTNRFK MIIYGLNPQQ LKKHEKDLVK STRQFTGSCN LLTIEKMIEH TAIENQIRTD 1210 1220 1230 1240 1250 1260 IYWYAVNPTT KKICKKQDIR KLFETSNVQL IAGKVQPWFR LERISEDAGD EGNMSSGGIL 1270 1280 1290 1300 1310 1320 STNWKTSNIL LIILAVTVAL GAIIGICAVC VFWSRYKTAQ RNASNFSHSY PQKLGPIYHP 1330 1340 1350 1360 1370 1380 TMMGVDPRTE YDYETQNVNM LISDEDLTMK SGSIGVPAHQ RMTLMGAGGG PGMGGPGGPQ 1390 1400 1410 1420 1430 1440 NGQGNQSYRT YGYRPAHSTA YEGDFSIEES MYAINPSGRL DPITNSHLNN NSTNRLHSSL 1450 1460 1470 1480 1490 1500 AQIFMQPINV MLAVLLALAS FAQGGRSVAP AGAVTEPTVT QAVPEGSGLS SDVTDRPNID 1510 1520 1530 1540 STDVVSNATS VEDLLGSSTN ANNTGTFNSR TFVIAPMMIL ALVQ

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FO080903 Genomic DNA. Translation: CCD67647.1.
PIR	T29482.
RefSeq	NP_501486.1. NM_069085.1.
UniGene	Cel.22993.
3D structure databases
HSSP	HSSP built from PDB template 1NCJ based on UniProtKB P15116.
ProteinModelPortal	Q19194.
SMR	Q19194. Positions 3-201, 248-449, 693-1153.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	F08B4.2a; F08B4.2a; F08B4.2.
GeneID	177671.
KEGG	cel:F08B4.2.
NMPDR	fig|6239.3.peg.14328.
UCSC	F08B4.2a. c. elegans.
Organism-specific databases
CTD	177671.
WormBase	F08B4.2a; CE07043; WBGene00000397; cdh-5.
Phylogenomic databases
eggNOG	KOG3594.
GeneTree	EMGT00050000002368.
InParanoid	Q19194.
OMA	TITIHIL.
PhylomeDB	Q19194.
Gene expression databases
ArrayExpress	Q19194.
Family and domain databases
InterPro	IPR002126. Cadherin. IPR015919. Cadherin-like. IPR020894. Cadherin_CS. [Graphical view]
Gene3D	G3DSA:2.60.40.60. Cadherin. 8 hits.
Pfam	PF00028. Cadherin. 4 hits. [Graphical view]
PRINTS	PR00205. CADHERIN.
SMART	SM00112. CA. 8 hits. [Graphical view]
SUPFAM	SSF49313. Cadherin. 8 hits.
PROSITE	PS00232. CADHERIN_1. 3 hits. PS50268. CADHERIN_2. 8 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	897866.

Entry information

Entry name

Q19194_CAEEL

Accession

Primary (citable) accession number: Q19194

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	January 25, 2012
This is version 78 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)