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Q19194 (Q19194_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:cdh-5 WormBase F08B4.2a
ORF Names:F08B4.2 EMBL CCD67647.1
OrganismCaenorhabditis elegans
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length1544 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Biological processCell adhesion SAAS SAAS020894
   Cellular componentMembrane
   DomainRepeat SAAS SAAS020894
Transmembrane SAAS SAAS020894
   LigandCalcium SAAS SAAS020894
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processhomophilic cell adhesion

Inferred from electronic annotation. Source: InterPro

   Cellular componentintegral to membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: InterPro

   Molecular functioncalcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q19194 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 8A0A3B97E600020B

FASTA1,544167,895
        10         20         30         40         50         60 
MGTTVRVSPN SQSESLQILV NDEDLQPGMP PATYQYILTG LGATIFAVDQ RGFVYLNVPK 

        70         80         90        100        110        120 
IDADPPNPST YQLNVEAREV NTVPTRRSEP VTITIHILDI NDNSPQFEQP IYMANTTASG 

       130        140        150        160        170        180 
DERDVVKVVA TDVDSGAFGQ VTYTIAQVTN GGEDKFRYET ATNMLVATGN LVPGERYQVV 

       190        200        210        220        230        240 
IEAIDGGGRS SQAIVIVLAL DPMHQTFSSL APLPGMETFM PNPLAMATTP GTMVTSAESE 

       250        260        270        280        290        300 
ETIQTFVTEV NENTPPNTVV VSLGDESSRE LTYFNVVGGN EEGKFAIDDA GTIVTAEELD 

       310        320        330        340        350        360 
REKTAMYSLQ VETRSRNPDQ HLYWTLVQVT VMDVNDNAPT FTDPQPIRLR LSIDDIEQLT 

       370        380        390        400        410        420 
GNMIIGRIGV EDADADDNGR LELRIMPPHN KLFAISNDGI LSVNGDFTAA HFGEHDLTVV 

       430        440        450        460        470        480 
ARDHGEPSLE TRARVQISIF GTLITMATVA PTNEVFEYTS SVEEEPQTTN PDEHLQTVTT 

       490        500        510        520        530        540 
SPSTKNQVSQ QIFSSFPAPQ VEQTGAPVEP EFPQFPTFPT LSPHPQIDEE TEEDEEVTDE 

       550        560        570        580        590        600 
YPDTVATVPT VTVAPDYSEE YGQEASSSSS TILPDVQGVW SEISELPSEN PITYTESPIT 

       610        620        630        640        650        660 
ESTAPAPETS PETAPEITPE RGSSAENELY PTEIAPENVE KPTELAPDLS ETTENTENQW 

       670        680        690        700        710        720 
LPDVVETSQV ELPSLPTTKM APPQPVPTQS PPLPTPKRLA PVFKPSQITV QIDENESQVE 

       730        740        750        760        770        780 
ITKAHATYPD GLSGTITYVL HKGDPSLFSV SSYSGSVNLL RALDAETNST VTIQISTSEA 

       790        800        810        820        830        840 
QTLEVDPKLA HFVSITINVA DKNDWIPNFE SASYEFDVKE DTLPGTIVGQ VNAFDQDRDE 

       850        860        870        880        890        900 
PNNRIRYRLL SAGGLEAHFN VNAESGLITL ARPIDAFAGE KITLRIEGAD SGMLPLSSTT 

       910        920        930        940        950        960 
TVLINVVATS SHLIPDASPV SNTPNEGELQ FSLRNYTASV SEAVRPPHLV QVLSVMNKPT 

       970        980        990       1000       1010       1020 
DTRFIICNII SGNYRGAFGI TAGNDGNCEL RTQMELDRET VERYLLNITV TAGAQTDYAL 

      1030       1040       1050       1060       1070       1080 
VSITVLDVND NVPRFVYDSD LGLTTYFGAV SSVANAFTRV LTVKAEDADL GNSSLVNYAL 

      1090       1100       1110       1120       1130       1140 
DPLSAHSKYF SISPFGEIST KQSMSTILSR NRLQFFEFRV SACDSPISGQ QLCSKADVVV 

      1150       1160       1170       1180       1190       1200 
NVIGSTNRFK MIIYGLNPQQ LKKHEKDLVK STRQFTGSCN LLTIEKMIEH TAIENQIRTD 

      1210       1220       1230       1240       1250       1260 
IYWYAVNPTT KKICKKQDIR KLFETSNVQL IAGKVQPWFR LERISEDAGD EGNMSSGGIL 

      1270       1280       1290       1300       1310       1320 
STNWKTSNIL LIILAVTVAL GAIIGICAVC VFWSRYKTAQ RNASNFSHSY PQKLGPIYHP 

      1330       1340       1350       1360       1370       1380 
TMMGVDPRTE YDYETQNVNM LISDEDLTMK SGSIGVPAHQ RMTLMGAGGG PGMGGPGGPQ 

      1390       1400       1410       1420       1430       1440 
NGQGNQSYRT YGYRPAHSTA YEGDFSIEES MYAINPSGRL DPITNSHLNN NSTNRLHSSL 

      1450       1460       1470       1480       1490       1500 
AQIFMQPINV MLAVLLALAS FAQGGRSVAP AGAVTEPTVT QAVPEGSGLS SDVTDRPNID 

      1510       1520       1530       1540 
STDVVSNATS VEDLLGSSTN ANNTGTFNSR TFVIAPMMIL ALVQ 

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References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FO080903 Genomic DNA. Translation: CCD67647.1.
PIRT29482.
RefSeqNP_501486.1. NM_069085.1.
UniGeneCel.22993.

3D structure databases

HSSPHSSP built from PDB template 1NCJ based on UniProtKB P15116.
ProteinModelPortalQ19194.
SMRQ19194. Positions 3-201, 248-449, 693-1153.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaF08B4.2a; F08B4.2a; F08B4.2.
GeneID177671.
KEGGcel:F08B4.2.
NMPDRfig|6239.3.peg.14328.
UCSCF08B4.2a. c. elegans.

Organism-specific databases

CTD177671.
WormBaseF08B4.2a; CE07043; WBGene00000397; cdh-5.

Phylogenomic databases

eggNOGKOG3594.
GeneTreeEMGT00050000002368.
InParanoidQ19194.
OMATITIHIL.
PhylomeDBQ19194.

Gene expression databases

ArrayExpressQ19194.

Family and domain databases

InterProIPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
[Graphical view]
Gene3DG3DSA:2.60.40.60. Cadherin. 8 hits.
PfamPF00028. Cadherin. 4 hits.
[Graphical view]
PRINTSPR00205. CADHERIN.
SMARTSM00112. CA. 8 hits.
[Graphical view]
SUPFAMSSF49313. Cadherin. 8 hits.
PROSITEPS00232. CADHERIN_1. 3 hits.
PS50268. CADHERIN_2. 8 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio897866.

Entry information

Entry nameQ19194_CAEEL
AccessionPrimary (citable) accession number: Q19194
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: January 25, 2012
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)