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Protein

50S ribosomal protein L13

Gene

rpl13

Organism
Haloquadratum walsbyi (strain DSM 16790 / HBSQ001)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rpl13UniRule annotation
Ordered Locus Names:HQ_2939A
OrganismiHaloquadratum walsbyi (strain DSM 16790 / HBSQ001)
Taxonomic identifieri362976 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHaloferacalesHaloferacaceaeHaloquadratum
Proteomesi
  • UP000001975 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002618361 – 14550S ribosomal protein L13Add BLAST145

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi362976.HQ2939A.

Structurei

3D structure databases

ProteinModelPortaliQ18G58.
SMRiQ18G58.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04242. Archaea.
COG0102. LUCA.
HOGENOMiHOG000225287.
KOiK02871.
OMAiRYHNFLH.
OrthoDBiPOG093Z0DQ4.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005755. Ribosomal_L13_euk/arc.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PTHR11545:SF8. PTHR11545:SF8. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01077. L13_A_E. 1 hit.

Sequencei

Sequence statusi: Complete.

Q18G58-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLAEFDADV VINAQNCIVG RVASEVAQRA LGGETVAIVN VEDAVITGSE
60 70 80 90 100
EDVMSVYETR SELGSDQGPA YPSRPDGIFK RAVRGMLPYK SDRGREALSN
110 120 130 140
VRTYVGNPYD DDGEAIDGTT LDRLSNIKFL SLGEVSANLG ATVTW
Length:145
Mass (Da):15,532
Last modified:July 25, 2006 - v1
Checksum:i6184C8012FDC0544
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180088 Genomic DNA. Translation: CAJ53043.1.
RefSeqiWP_011572153.1. NC_008212.1.

Genome annotation databases

EnsemblBacteriaiCAJ53043; CAJ53043; HQ_2939A.
GeneIDi4194603.
KEGGihwa:HQ_2939A.

Similar proteinsi

Entry informationi

Entry nameiRL13_HALWD
AccessioniPrimary (citable) accession number: Q18G58
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: July 25, 2006
Last modified: June 7, 2017
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families