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Protein
Submitted name:

Putative cell wall hydrolase Tn916-like,CTn1-Orf17

Gene

CD630_03720

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-489-MONOMER.

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.
MEROPSiC40.007.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative cell wall hydrolase Tn916-like,CTn1-Orf17Imported
Gene namesi
Ordered Locus Names:CD630_03720Imported
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)Imported
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2929Sequence analysisAdd
BLAST
Chaini30 – 335306Sequence analysisPRO_5004186952Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272563.CD0372.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HPEX-ray2.38A/B/C/D/E/F29-335[»]
ProteinModelPortaliQ18DB2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini226 – 331106NLPC_P60InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105K4H. Bacteria.
COG0741. LUCA.
COG0791. LUCA.
HOGENOMiHOG000267549.
OMAiMFYVELV.
OrthoDBiEOG6J751G.

Family and domain databases

Gene3Di3.90.1720.10. 1 hit.
InterProiIPR023346. Lysozyme-like_dom.
IPR000064. NLP_P60_dom.
[Graphical view]
PfamiPF00877. NLPC_P60. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.

Sequencei

Sequence statusi: Complete.

Q18DB2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLKHIALIG SLFPILFSLV LFFGVLISAD SDDENSNFSS GITGMNLSAE
60 70 80 90 100
VLKHQPMVEK YARENGISEY VNVLLAIIQV ESGGTAEDVM QSSESLGLPP
110 120 130 140 150
NSLDTESSIK QGCKYFASLL SSSKNQGIDD LNVAIQSYNY GGGYVGYVAG
160 170 180 190 200
KGKKHTFNLA ESFAREKSGG KKVTYTNPIA VAKNGGWRWN YGNMFYVELV
210 220 230 240 250
NQYLTVPQVS GELAQKVMNE ALKYQGWKYV YGGSNPNTSF DCSGLTQWCY
260 270 280 290 300
GKAGISLPRT AQAQYDATQH LPLSQAKAGD LVFFHSTYNA GSYVTHVGIY
310 320 330
VGNNQMYHAG DPIGYADLSS SYWQQHLIGA GRVKQ
Length:335
Mass (Da):36,542
Last modified:July 25, 2006 - v1
Checksum:i82040053C51E4F55
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67194.1.
RefSeqiWP_011860759.1. NZ_CP010905.1.
YP_001086839.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ67194; CAJ67194; CD630_03720.
GeneIDi4916483.
KEGGicdf:CD630_03720.
pdc:CDIF630_00499.
PATRICi19438999. VBICloDif38397_0393.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67194.1.
RefSeqiWP_011860759.1. NZ_CP010905.1.
YP_001086839.1. NC_009089.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4HPEX-ray2.38A/B/C/D/E/F29-335[»]
ProteinModelPortaliQ18DB2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD0372.

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.
MEROPSiC40.007.

Protocols and materials databases

DNASUi4916483.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ67194; CAJ67194; CD630_03720.
GeneIDi4916483.
KEGGicdf:CD630_03720.
pdc:CDIF630_00499.
PATRICi19438999. VBICloDif38397_0393.

Phylogenomic databases

eggNOGiENOG4105K4H. Bacteria.
COG0741. LUCA.
COG0791. LUCA.
HOGENOMiHOG000267549.
OMAiMFYVELV.
OrthoDBiEOG6J751G.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-489-MONOMER.

Family and domain databases

Gene3Di3.90.1720.10. 1 hit.
InterProiIPR023346. Lysozyme-like_dom.
IPR000064. NLP_P60_dom.
[Graphical view]
PfamiPF00877. NLPC_P60. 1 hit.
[Graphical view]
SUPFAMiSSF53955. SSF53955. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 630Imported.
  2. "Crystal structure of a putative cell wall hydrolase (CD630_03720) from Clostridium difficile 630 at 2.38 A resolution."
    Joint Center for Structural Genomics (JCSG)
    Submitted (OCT-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.38 ANGSTROMS) OF 29-335.

Entry informationi

Entry nameiQ18DB2_PEPD6
AccessioniPrimary (citable) accession number: Q18DB2
Entry historyi
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: May 11, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.