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Protein

Carbon storage regulator homolog

Gene

csrA

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Could accelerate the degradation of some genes transcripts potentially through selective RNA binding.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-346-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Carbon storage regulator homologUniRule annotation
Gene namesi
Name:csrAUniRule annotation
Ordered Locus Names:CD630_02340
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7070Carbon storage regulator homologPRO_1000023372Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272563.CD0234.

Structurei

3D structure databases

ProteinModelPortaliQ18CX3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CsrA family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VM8. Bacteria.
COG1551. LUCA.
HOGENOMiHOG000020767.
KOiK03563.
OMAiIYARIQR.

Family and domain databases

HAMAPiMF_00167. CsrA. 1 hit.
InterProiIPR003751. CsrA.
[Graphical view]
PfamiPF02599. CsrA. 1 hit.
[Graphical view]
ProDomiPD009007. CsrA. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00202. csrA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q18CX3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLVISRKKDE AVLIGDNIEV KVVGVDGNNI KLAISAPNNI SILRKEIYEK
60 70
VKNENIKATN KNIKILKSLK
Length:70
Mass (Da):7,800
Last modified:July 25, 2006 - v1
Checksum:i1D004D5736384260
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67055.1.
RefSeqiWP_003425267.1. NZ_CP010905.1.
YP_001086702.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ67055; CAJ67055; CD630_02340.
GeneIDi4916752.
KEGGicdf:CD630_02340.
pdc:CDIF630_00356.
PATRICi19438711. VBICloDif38397_0252.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67055.1.
RefSeqiWP_003425267.1. NZ_CP010905.1.
YP_001086702.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ18CX3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD0234.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ67055; CAJ67055; CD630_02340.
GeneIDi4916752.
KEGGicdf:CD630_02340.
pdc:CDIF630_00356.
PATRICi19438711. VBICloDif38397_0252.

Phylogenomic databases

eggNOGiENOG4105VM8. Bacteria.
COG1551. LUCA.
HOGENOMiHOG000020767.
KOiK03563.
OMAiIYARIQR.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-346-MONOMER.

Family and domain databases

HAMAPiMF_00167. CsrA. 1 hit.
InterProiIPR003751. CsrA.
[Graphical view]
PfamiPF02599. CsrA. 1 hit.
[Graphical view]
ProDomiPD009007. CsrA. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00202. csrA. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiCSRA_PEPD6
AccessioniPrimary (citable) accession number: Q18CX3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 25, 2006
Last modified: September 7, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.