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Protein

50S ribosomal protein L36

Gene

rpmJ

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciPDIF272563:G12WB-152-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36UniRule annotation
Gene namesi
Name:rpmJUniRule annotation
Ordered Locus Names:CD630_00941
ORF Names:CD0094A
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeClostridioides
Proteomesi
  • UP000001978 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003021831 – 3750S ribosomal protein L36Add BLAST37

Interactioni

Protein-protein interaction databases

STRINGi272563.CD0094A.

Structurei

3D structure databases

ProteinModelPortaliQ18CI1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L36P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111584.
KOiK02919.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q18CI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MKVRPSVKPI CEKCKVIKRK GKVMVICENP KHKQKQG
Length:37
Mass (Da):4,277
Last modified:July 25, 2006 - v1
Checksum:i7F79A9F2C6BF4CF7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ66913.1.
RefSeqiWP_002509257.1. NZ_CP010905.1.
YP_001086562.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ66913; CAJ66913; CD630_00941.
GeneIDi4916517.
KEGGicdf:CD630_00941.
pdc:CDIF630_00164.
PATRICi19438335. VBICloDif38397_0109.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ66913.1.
RefSeqiWP_002509257.1. NZ_CP010905.1.
YP_001086562.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ18CI1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD0094A.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ66913; CAJ66913; CD630_00941.
GeneIDi4916517.
KEGGicdf:CD630_00941.
pdc:CDIF630_00164.
PATRICi19438335. VBICloDif38397_0109.

Phylogenomic databases

eggNOGiENOG41067V7. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111584.
KOiK02919.

Enzyme and pathway databases

BioCyciPDIF272563:G12WB-152-MONOMER.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL36_PEPD6
AccessioniPrimary (citable) accession number: Q18CI1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: July 25, 2006
Last modified: November 2, 2016
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.