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Protein

30S ribosomal protein S5

Gene

rpsE

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

With S4 and S12 plays an important role in translational accuracy.UniRule annotation
Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-145-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S5UniRule annotation
Gene namesi
Name:rpsEUniRule annotation
Ordered Locus Names:CD630_00880
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 16916930S ribosomal protein S5PRO_0000323110Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.UniRule annotation

Protein-protein interaction databases

STRINGi272563.CD0088.

Structurei

3D structure databases

ProteinModelPortaliQ18CH3.
SMRiQ18CH3. Positions 7-151.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini14 – 7764S5 DRBMUniRule annotationAdd
BLAST

Domaini

The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.

Sequence similaritiesi

Belongs to the ribosomal protein S5P family.UniRule annotation
Contains 1 S5 DRBM domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108RA9. Bacteria.
COG0098. LUCA.
HOGENOMiHOG000072595.
KOiK02988.
OMAiLERDSDW.
OrthoDBiEOG6FJNM5.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B.
InterProiIPR014720. dsRBD_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q18CH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRRKPIDAG QLDLQEKVVE VRRVTKVVKG GRNFRFAALV VVGDENGHVG
60 70 80 90 100
IGAGKAMEVP DAIKKAVEDA KKNLIVVPIV GTTIPHEVRG HFGAGNILIM
110 120 130 140 150
PAVEGTGVIA GGPARAVLEL AGLKDVRAKS LGSNNPRNMV NATIEGLNSL
160
KTVEDIAKLR GKKVEELLG
Length:169
Mass (Da):17,851
Last modified:July 25, 2006 - v1
Checksum:i01F15B4B894046A7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ66905.1.
RefSeqiWP_003421138.1. NZ_CP010905.1.
YP_001086554.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ66905; CAJ66905; CD630_00880.
GeneIDi4916509.
KEGGicdf:CD630_00880.
pdc:CDIF630_00156.
PATRICi19438319. VBICloDif38397_0101.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ66905.1.
RefSeqiWP_003421138.1. NZ_CP010905.1.
YP_001086554.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ18CH3.
SMRiQ18CH3. Positions 7-151.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD0088.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ66905; CAJ66905; CD630_00880.
GeneIDi4916509.
KEGGicdf:CD630_00880.
pdc:CDIF630_00156.
PATRICi19438319. VBICloDif38397_0101.

Phylogenomic databases

eggNOGiENOG4108RA9. Bacteria.
COG0098. LUCA.
HOGENOMiHOG000072595.
KOiK02988.
OMAiLERDSDW.
OrthoDBiEOG6FJNM5.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-145-MONOMER.

Family and domain databases

Gene3Di3.30.160.20. 1 hit.
3.30.230.10. 1 hit.
HAMAPiMF_01307_B. Ribosomal_S5_B.
InterProiIPR014720. dsRBD_dom.
IPR000851. Ribosomal_S5.
IPR005712. Ribosomal_S5_bac-type.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
[Graphical view]
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiPF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01021. rpsE_bact. 1 hit.
PROSITEiPS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 630.

Entry informationi

Entry nameiRS5_PEPD6
AccessioniPrimary (citable) accession number: Q18CH3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 18, 2008
Last sequence update: July 25, 2006
Last modified: November 11, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.