Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

30S ribosomal protein S8

Gene

rpsH

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-142-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S8UniRule annotation
Gene namesi
Name:rpsHUniRule annotation
Ordered Locus Names:CD630_00850
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13213230S ribosomal protein S8PRO_0000290821Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.UniRule annotation

Protein-protein interaction databases

STRINGi272563.CD0085.

Structurei

3D structure databases

ProteinModelPortaliQ18CH0.
SMRiQ18CH0. Positions 3-131.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UJY. Bacteria.
COG0096. LUCA.
HOGENOMiHOG000204095.
KOiK02994.
OMAiRIYKNTR.
OrthoDBiEOG6Z0QH1.

Family and domain databases

HAMAPiMF_01302_B. Ribosomal_S8_B.
InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q18CH0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTMTDPIADM LTRIRNANVV KHETVDVPAS NMKKELARIL LEEGFIRGYD
60 70 80 90 100
VIEDGKQGII RIQLKYGQEG ERVITGLKKI SKPGMRVYAA NHEIPKVLNG
110 120 130
LGISVISTSK GILTDKQARK ENVGGEVICY VW
Length:132
Mass (Da):14,680
Last modified:July 25, 2006 - v1
Checksum:iC8E51B6932B1A710
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ66902.1.
RefSeqiWP_003421148.1. NZ_CP010905.1.
YP_001086551.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ66902; CAJ66902; CD630_00850.
GeneIDi4916506.
KEGGicdf:CD630_00850.
pdc:CDIF630_00153.
PATRICi19438313. VBICloDif38397_0098.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ66902.1.
RefSeqiWP_003421148.1. NZ_CP010905.1.
YP_001086551.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ18CH0.
SMRiQ18CH0. Positions 3-131.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD0085.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ66902; CAJ66902; CD630_00850.
GeneIDi4916506.
KEGGicdf:CD630_00850.
pdc:CDIF630_00153.
PATRICi19438313. VBICloDif38397_0098.

Phylogenomic databases

eggNOGiENOG4108UJY. Bacteria.
COG0096. LUCA.
HOGENOMiHOG000204095.
KOiK02994.
OMAiRIYKNTR.
OrthoDBiEOG6Z0QH1.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-142-MONOMER.

Family and domain databases

HAMAPiMF_01302_B. Ribosomal_S8_B.
InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 630.

Entry informationi

Entry nameiRS8_PEPD6
AccessioniPrimary (citable) accession number: Q18CH0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: July 25, 2006
Last modified: November 11, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.