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Protein

UPF0271 protein CD630_13840

Gene

CD630_13840

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-1552-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0271 protein CD630_13840UniRule annotation
Gene namesi
Ordered Locus Names:CD630_13840
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 263263UPF0271 protein CD630_13840PRO_1000045200Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272563.CD1384.

Structurei

3D structure databases

ProteinModelPortaliQ18BQ3.
SMRiQ18BQ3. Positions 3-254.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0271 (lamB) family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105E7W. Bacteria.
COG1540. LUCA.
HOGENOMiHOG000237330.
KOiK07160.
OMAiAQVGYRD.
OrthoDBiEOG6CZQJG.

Family and domain databases

HAMAPiMF_00691. UPF0271.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.

Sequencei

Sequence statusi: Complete.

Q18BQ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYKVDLNSDL GESFGTYKIG LDEEVLKYIS SANIACGFHA GDPSHMEKTV
60 70 80 90 100
QLAKKNGVKI GAHPGFLDLI GFGRREMKIT KQEAKDYTKY QLGALMAFAS
110 120 130 140 150
SNGCNIQHVK PHGALYNMAA KDKELAMGIC EAIYEVDKDI ILLGLYNSEM
160 170 180 190 200
INSAKEIGLR FANEVFADRA YDNNGFLVPR SVEGAVIHDT KHAIDRVVRM
210 220 230 240 250
VKEGTVETLT GEVIHIKADS ICVHGDNPKA IEFVKEIRKR FELESIEVCP
260
LENIEVCSSE NIV
Length:263
Mass (Da):29,129
Last modified:July 25, 2006 - v1
Checksum:i8C4172920E6D56A5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ68246.1.
RefSeqiWP_009896287.1. NZ_CP010905.1.
YP_001087884.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ68246; CAJ68246; CD630_13840.
GeneIDi4914819.
KEGGicdf:CD630_13840.
pdc:CDIF630_01544.
PATRICi19441135. VBICloDif38397_1455.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ68246.1.
RefSeqiWP_009896287.1. NZ_CP010905.1.
YP_001087884.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ18BQ3.
SMRiQ18BQ3. Positions 3-254.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD1384.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ68246; CAJ68246; CD630_13840.
GeneIDi4914819.
KEGGicdf:CD630_13840.
pdc:CDIF630_01544.
PATRICi19441135. VBICloDif38397_1455.

Phylogenomic databases

eggNOGiENOG4105E7W. Bacteria.
COG1540. LUCA.
HOGENOMiHOG000237330.
KOiK07160.
OMAiAQVGYRD.
OrthoDBiEOG6CZQJG.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-1552-MONOMER.

Family and domain databases

HAMAPiMF_00691. UPF0271.
InterProiIPR011330. Glyco_hydro/deAcase_b/a-brl.
IPR005501. UPF0271_LamB_YcsF.
[Graphical view]
PfamiPF03746. LamB_YcsF. 1 hit.
[Graphical view]
SUPFAMiSSF88713. SSF88713. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 630.

Entry informationi

Entry nameiY1384_PEPD6
AccessioniPrimary (citable) accession number: Q18BQ3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 25, 2006
Last modified: November 11, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.