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Protein
Submitted name:

Pyrimidine-nucleoside phosphorylase

Gene

pdp

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferaseSAAS annotationImported, Transferase

Enzyme and pathway databases

BioCyciPDIF272563:G12WB-1356-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
Pyrimidine-nucleoside phosphorylaseImported (EC:2.4.2.2Imported)
Gene namesi
Name:pdpImported
Ordered Locus Names:CD630_12250Imported
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)Imported
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeClostridioides
Proteomesi
  • UP000001978 Componenti: Chromosome

Interactioni

Subunit structurei

Homodimer.SAAS annotation

Protein-protein interaction databases

STRINGi272563.CD1225

Structurei

3D structure databases

ProteinModelPortaliQ18B84
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini350 – 424PYNP_CInterPro annotationAdd BLAST75

Sequence similaritiesi

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CMW Bacteria
COG0213 LUCA
HOGENOMiHOG000047312
KOiK00756
OMAiVHSIGGV

Family and domain databases

Gene3Di3.40.1030.10, 1 hit
3.90.1170.30, 1 hit
InterProiView protein in InterPro
IPR000312 Glycosyl_Trfase_fam3
IPR017459 Glycosyl_Trfase_fam3_N_dom
IPR036320 Glycosyl_Trfase_fam3_N_dom)sf
IPR035902 Nuc_phospho_transferase
IPR036566 PYNP-like_C_sf
IPR013102 PYNP_C
IPR018090 Pyrmidine_PPas_bac/euk
IPR017872 Pyrmidine_PPase_CS
IPR000053 Thymidine/pyrmidine_PPase
PANTHERiPTHR10515 PTHR10515, 1 hit
PfamiView protein in Pfam
PF02885 Glycos_trans_3N, 1 hit
PF00591 Glycos_transf_3, 1 hit
PF07831 PYNP_C, 1 hit
PIRSFiPIRSF000478 TP_PyNP, 1 hit
SMARTiView protein in SMART
SM00941 PYNP_C, 1 hit
SUPFAMiSSF47648 SSF47648, 1 hit
SSF52418 SSF52418, 1 hit
SSF54680 SSF54680, 1 hit
TIGRFAMsiTIGR02644 Y_phosphoryl, 1 hit
PROSITEiView protein in PROSITE
PS00647 THYMID_PHOSPHORYLASE, 1 hit

Sequencei

Sequence statusi: Complete.

Q18B84-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEISIMRMYD IIKKKRDNLE LSKKEINYFI ENYSKGDIPD YQASALLMSI
60 70 80 90 100
YLNKMNKQET VHLTEAMMNS GDMINLSEID GIKVDKHSTG GVGDKTTIAL
110 120 130 140 150
IPLVASCGAP VAKMSGRGLG HTGGTIDKLE SIPGFSTEME ISKFIDSVNK
160 170 180 190 200
SKIAVCGQSA KVAIADKKIY ALRDVTATVD NISLISSSVM SKKLASGADA
210 220 230 240 250
IVLDVKTGDG AFMKTLEESF ELAKSMVDIG TGMNRDTIGI VTDMDEPLGF
260 270 280 290 300
AVGNSLEVIE AIETLKGNGP KDLVELCEVL GAYMLVLSKV AHDFEDGVEK
310 320 330 340 350
IRESIKSGTA IQKLKEFIEN QGGNKDVVDD YSLFKKSKYK YPVKSTKSGY
360 370 380 390 400
ISKIKAEDVG VSAMILGAGR ETKDDILDLS AGIILEKKVG DYVNEGEVLA
410 420 430 440
YMYYNDEQKL SLAKGRFIDS YSIVDSKIEK NKLIYGIVTK EEIKKF
Length:446
Mass (Da):48,738
Last modified:July 25, 2006 - v1
Checksum:i286324FA5E6E1A2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA Translation: CAJ68079.1
RefSeqiWP_003438162.1, NZ_CP010905.2
YP_001087718.1, NC_009089.1

Genome annotation databases

EnsemblBacteriaiCAJ68079; CAJ68079; CD630_12250
GeneIDi31352803
4914867
KEGGicdf:CD630_12250
PATRICifig|272563.8.peg.1284

Similar proteinsi

Entry informationi

Entry nameiQ18B84_PEPD6
AccessioniPrimary (citable) accession number: Q18B84
Entry historyiIntegrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: March 28, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health