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Protein

50S ribosomal protein L27

Gene

rpmA

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-1326-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L27UniRule annotation
Gene namesi
Name:rpmAUniRule annotation
Ordered Locus Names:CD630_11630
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 969650S ribosomal protein L27PRO_1000128723Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272563.CD1163.

Structurei

3D structure databases

ProteinModelPortaliQ18B22.
SMRiQ18B22. Positions 10-94.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L27P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
HOGENOMiHOG000111610.
KOiK02899.
OMAiSYVSVIP.
OrthoDBiEOG6N94H6.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q18B22-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLNMNLQLLA SKKGVGSSKN GRDSISKRLG VKRFDGQLVT AGSIIVRQRG
60 70 80 90
TKIHPGTNVG KGSDDTLFAL VDGTVKFERK DKKRKKVSIY PVAIAE
Length:96
Mass (Da):10,427
Last modified:July 25, 2006 - v1
Checksum:i4688180E06563336
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ68016.1.
RefSeqiWP_003419086.1. NZ_CP010905.1.
YP_001087655.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ68016; CAJ68016; CD630_11630.
GeneIDi4914991.
KEGGicdf:CD630_11630.
pdc:CDIF630_01310.
PATRICi19440667. VBICloDif38397_1221.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ68016.1.
RefSeqiWP_003419086.1. NZ_CP010905.1.
YP_001087655.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ18B22.
SMRiQ18B22. Positions 10-94.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD1163.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ68016; CAJ68016; CD630_11630.
GeneIDi4914991.
KEGGicdf:CD630_11630.
pdc:CDIF630_01310.
PATRICi19440667. VBICloDif38397_1221.

Phylogenomic databases

eggNOGiENOG4105K46. Bacteria.
COG0211. LUCA.
HOGENOMiHOG000111610.
KOiK02899.
OMAiSYVSVIP.
OrthoDBiEOG6N94H6.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-1326-MONOMER.

Family and domain databases

HAMAPiMF_00539. Ribosomal_L27.
InterProiIPR001684. Ribosomal_L27.
IPR018261. Ribosomal_L27_CS.
[Graphical view]
PANTHERiPTHR15893. PTHR15893. 1 hit.
PfamiPF01016. Ribosomal_L27. 1 hit.
[Graphical view]
PRINTSiPR00063. RIBOSOMALL27.
ProDomiPD003114. Ribosomal_L27. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00062. L27. 1 hit.
PROSITEiPS00831. RIBOSOMAL_L27. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 630.

Entry informationi

Entry nameiRL27_PEPD6
AccessioniPrimary (citable) accession number: Q18B22
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: July 25, 2006
Last modified: November 11, 2015
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.