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Protein

Electron transport complex subunit E

Gene

rnfE

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of a membrane complex involved in electron transport.UniRule annotation

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transportUniRule annotation, Transport

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-1302-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Electron transport complex subunit EUniRule annotation
Gene namesi
Name:rnfEImported
Ordered Locus Names:CD630_11400Imported
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)Imported
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

Subcellular locationi

  • Cell membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei38 – 5821HelicalUniRule annotationAdd
BLAST
Transmembranei68 – 8821HelicalUniRule annotationAdd
BLAST
Transmembranei92 – 11221HelicalUniRule annotationAdd
BLAST
Transmembranei127 – 14721HelicalUniRule annotationAdd
BLAST
Transmembranei169 – 18921HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membraneUniRule annotation, Membrane

Interactioni

Subunit structurei

Composed of six subunits.UniRule annotation

Protein-protein interaction databases

STRINGi272563.CD1140.

Structurei

3D structure databases

ProteinModelPortaliQ18AZ8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the NqrDE/RnfAE family.UniRule annotationSAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105DZB. Bacteria.
COG4660. LUCA.
HOGENOMiHOG000279325.
KOiK03613.
OMAiFDGFAMG.

Family and domain databases

HAMAPiMF_00478. RsxE_RnfE. 1 hit.
InterProiIPR003667. Rnf-Nqr.
IPR010968. RsxE.
[Graphical view]
PfamiPF02508. Rnf-Nqr. 1 hit.
[Graphical view]
PIRSFiPIRSF006102. NQR_DE. 1 hit.
TIGRFAMsiTIGR01948. rnfE. 1 hit.

Sequencei

Sequence statusi: Complete.

Q18AZ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLAKVFKNG LIDENPTFVQ VIGMCPTLAV TTSAINGIGM GLSTAAVLIC
60 70 80 90 100
ANLVISLIRK ITPDKIRIPI FIVVIATFVT IVGMLLKAYV PALDKALGIY
110 120 130 140 150
IPLIVVNCLI LARAESFAFK TGAMPSIVDG VGQGLGFTVA LTIIGAVREL
160 170 180 190
LGNGSLFGMT LFGASFQPVL IFILPPGAFL TLGFLFAGFN KLRSKKA
Length:197
Mass (Da):20,730
Last modified:July 25, 2006 - v1
Checksum:i6A5FDB9C84041E5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67992.1.
RefSeqiWP_003419045.1. NC_009089.1.
YP_001087631.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ67992; CAJ67992; CD630_11400.
GeneIDi4916291.
KEGGicdf:CD630_11400.
pdc:CDIF630_01287.
PATRICi19440619. VBICloDif38397_1197.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67992.1.
RefSeqiWP_003419045.1. NC_009089.1.
YP_001087631.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ18AZ8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD1140.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ67992; CAJ67992; CD630_11400.
GeneIDi4916291.
KEGGicdf:CD630_11400.
pdc:CDIF630_01287.
PATRICi19440619. VBICloDif38397_1197.

Phylogenomic databases

eggNOGiENOG4105DZB. Bacteria.
COG4660. LUCA.
HOGENOMiHOG000279325.
KOiK03613.
OMAiFDGFAMG.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-1302-MONOMER.

Family and domain databases

HAMAPiMF_00478. RsxE_RnfE. 1 hit.
InterProiIPR003667. Rnf-Nqr.
IPR010968. RsxE.
[Graphical view]
PfamiPF02508. Rnf-Nqr. 1 hit.
[Graphical view]
PIRSFiPIRSF006102. NQR_DE. 1 hit.
TIGRFAMsiTIGR01948. rnfE. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ18AZ8_PEPD6
AccessioniPrimary (citable) accession number: Q18AZ8
Entry historyi
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: September 7, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.