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Protein
Submitted name:

ABC-type transport system,spermidine/putrescine permease

Gene

potC

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciPDIF272563:G12WB-1141-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ABC-type transport system,spermidine/putrescine permeaseImported
Gene namesi
Name:potCImported
Ordered Locus Names:CD630_10260Imported
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)Imported
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeClostridioides
Proteomesi
  • UP000001978 Componenti: Chromosome

Subcellular locationi

  • Cell membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei44 – 66HelicalUniRule annotationAdd BLAST23
Transmembranei78 – 105HelicalUniRule annotationAdd BLAST28
Transmembranei111 – 131HelicalUniRule annotationAdd BLAST21
Transmembranei167 – 188HelicalUniRule annotationAdd BLAST22
Transmembranei213 – 232HelicalUniRule annotationAdd BLAST20

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi272563.CD1026.

Structurei

3D structure databases

ProteinModelPortaliQ18AM6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini43 – 231ABC transmembrane type-1InterPro annotationAdd BLAST189

Sequence similaritiesi

Belongs to the binding-protein-dependent transport system permease family.UniRule annotation
Contains 1 ABC transmembrane type-1 domain.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105D38. Bacteria.
COG1177. LUCA.
HOGENOMiHOG000263700.
KOiK11070.
OMAiSVRMGVS.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q18AM6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYAPIFALVL FSFNDSKSMA RWNGFTWKWY GQLLQNESIM SALYYTIVIA
60 70 80 90 100
ILASVISTIV GTISAIGIHK MRGKSKKLIL NVNYLPILNT EIVTAVALMS
110 120 130 140 150
LFVFVKMEFG FTTMLLAHIM FCLPYVILSV LPKMKQLPDN IEDAAMDLGA
160 170 180 190 200
TPIYALRKVI LPQIKPGIVS GFLIAFTMSI DDFIISFFNA GNGVSNLSIE
210 220 230 240
IYGMARRGIK PEINALSTIM FAVVLGLLLL ANKKESIVRG IK
Length:242
Mass (Da):26,814
Last modified:July 25, 2006 - v1
Checksum:i81BAD476F822265A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67867.1.
RefSeqiWP_011861072.1. NC_009089.1.
YP_001087507.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ67867; CAJ67867; CD630_10260.
GeneIDi4916766.
KEGGicdf:CD630_10260.
pdc:CDIF630_01162.
PATRICi19440371. VBICloDif38397_1078.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67867.1.
RefSeqiWP_011861072.1. NC_009089.1.
YP_001087507.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ18AM6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD1026.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ67867; CAJ67867; CD630_10260.
GeneIDi4916766.
KEGGicdf:CD630_10260.
pdc:CDIF630_01162.
PATRICi19440371. VBICloDif38397_1078.

Phylogenomic databases

eggNOGiENOG4105D38. Bacteria.
COG1177. LUCA.
HOGENOMiHOG000263700.
KOiK11070.
OMAiSVRMGVS.

Enzyme and pathway databases

BioCyciPDIF272563:G12WB-1141-MONOMER.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ18AM6_PEPD6
AccessioniPrimary (citable) accession number: Q18AM6
Entry historyi
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: November 30, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.