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Protein
Submitted name:

Agmatinase (Agmatine ureohydrolase) (AUH)

Gene

speB

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi111Manganese 1; via pros nitrogenCombined sources1
Metal bindingi134Manganese 1Combined sources1
Metal bindingi134Manganese 2Combined sources1
Metal bindingi136Manganese 2; via pros nitrogenCombined sources1
Metal bindingi138Manganese 1Combined sources1
Metal bindingi215Manganese 1Combined sources1
Metal bindingi215Manganese 2Combined sources1
Metal bindingi217Manganese 2Combined sources1

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseUniRule annotationSAAS annotationImported

Keywords - Ligandi

ManganeseCombined sourcesSAAS annotation, Metal-bindingCombined sourcesSAAS annotation

Enzyme and pathway databases

BioCyciPDIF272563:G12WB-999-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Agmatinase (Agmatine ureohydrolase) (AUH)Imported (EC:3.5.3.11Imported)
Gene namesi
Name:speBImported
Ordered Locus Names:CD630_08910Imported
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)Imported
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeClostridioides
Proteomesi
  • UP000001978 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272563.CD0891.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3LHLX-ray2.30A17-292[»]
ProteinModelPortaliQ18A84.
SMRiQ18A84.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the arginase family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYW. Bacteria.
COG0010. LUCA.
HOGENOMiHOG000204321.
KOiK01480.
OMAiGNDMPRF.

Family and domain databases

Gene3Di3.40.800.10. 1 hit.
InterProiIPR005925. Agmatinase-rel.
IPR006035. Ureohydrolase.
IPR023696. Ureohydrolase_domain.
IPR020855. Ureohydrolase_Mn_BS.
[Graphical view]
PANTHERiPTHR11358. PTHR11358. 1 hit.
PfamiPF00491. Arginase. 1 hit.
[Graphical view]
PIRSFiPIRSF036979. Arginase. 1 hit.
TIGRFAMsiTIGR01230. agmatinase. 1 hit.
PROSITEiPS01053. ARGINASE_1. 1 hit.
PS51409. ARGINASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q18A84-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNNFYHMNT FMSMDKNYEE SNLIVFGVGF DGTTSNRPGA RFASSSMRKE
60 70 80 90 100
FYGLETYSPF LDLDLEDYNI CDYGDLEISV GSTEQVLKEI YQETYKIVRD
110 120 130 140 150
SKVPFMIGGE HLVTLPAFKA VHEKYNDIYV IHFDAHTDLR EEYNNSKNSH
160 170 180 190 200
ATVIKRIWDI VGDNKIFQFG IRSGTKEEFK FATEEKHTYM EIGGIDTFEN
210 220 230 240 250
IVNMLNGKNI YLTIDLDVLD ASVFPGTGTP EPGGVNYREF QEIFKIIKNS
260 270 280 290
NINIVGCDIV ELSPDYDTTG VSTVIACKIL RELCLIISDK IK
Length:292
Mass (Da):33,308
Last modified:July 25, 2006 - v1
Checksum:i0DC0051680330A9E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67724.1.
RefSeqiWP_009888724.1. NZ_CP010905.1.
YP_001087365.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ67724; CAJ67724; CD630_08910.
GeneIDi4914143.
KEGGicdf:CD630_08910.
pdc:CDIF630_01011.
PATRICi19440075. VBICloDif38397_0930.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67724.1.
RefSeqiWP_009888724.1. NZ_CP010905.1.
YP_001087365.1. NC_009089.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3LHLX-ray2.30A17-292[»]
ProteinModelPortaliQ18A84.
SMRiQ18A84.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD0891.

Protocols and materials databases

DNASUi4914143.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ67724; CAJ67724; CD630_08910.
GeneIDi4914143.
KEGGicdf:CD630_08910.
pdc:CDIF630_01011.
PATRICi19440075. VBICloDif38397_0930.

Phylogenomic databases

eggNOGiENOG4105CYW. Bacteria.
COG0010. LUCA.
HOGENOMiHOG000204321.
KOiK01480.
OMAiGNDMPRF.

Enzyme and pathway databases

BioCyciPDIF272563:G12WB-999-MONOMER.

Family and domain databases

Gene3Di3.40.800.10. 1 hit.
InterProiIPR005925. Agmatinase-rel.
IPR006035. Ureohydrolase.
IPR023696. Ureohydrolase_domain.
IPR020855. Ureohydrolase_Mn_BS.
[Graphical view]
PANTHERiPTHR11358. PTHR11358. 1 hit.
PfamiPF00491. Arginase. 1 hit.
[Graphical view]
PIRSFiPIRSF036979. Arginase. 1 hit.
TIGRFAMsiTIGR01230. agmatinase. 1 hit.
PROSITEiPS01053. ARGINASE_1. 1 hit.
PS51409. ARGINASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ18A84_PEPD6
AccessioniPrimary (citable) accession number: Q18A84
Entry historyi
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: November 2, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.