Q18A77 (Q18A77_CLOD6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative alpha-amylase EMBL CAJ67719.1
EC=3.2.1.- EMBL CAJ67719.1

Gene names

Ordered Locus Names:

CD630_08860

Organism

Clostridium difficile (strain 630) [Complete proteome] [HAMAP]

Taxonomic identifier

272563 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	621 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Glycosidase EMBL CAJ67719.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, acting on glycosyl bonds Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q18A77 [UniParc]. Last modified July 25, 2006. Version 1. Checksum: D18C492951D767B8	FASTA	621	72,683
	10 20 30 40 50 60 MQSVIEYNSW DKNFKAPFGA LKFDEELTIC VKVNEGYNIK SISLEINREE EMRTITLNEE 70 80 90 100 110 120 LDNDKLGKCF CGKIEKFDGT GVYFYYFKVD VEMDGQIKTL FYGKNRDNGY SCEYNYSDIN 130 140 150 160 170 180 KYQITVYKDF KVPTWYKEGI LYHIFVDRFN NGNRSGKVDN PKKNSFIYGN WEDTPMYIKD 190 200 210 220 230 240 SQGDVIRWDF HGGNLRGIIN KLGYLKKLGV SILYLSPIFE ASSNHKYDTG DYKKIDPMFG 250 260 270 280 290 300 DEDTFKELID KAKEKGISIV LDGVFSHTGA DSKYFNMYGN YNSLGAYQSK ESPYYSWYMF 310 320 330 340 350 360 EEFPQKYKSW WDVKTLPNIN ELEHSYMDYI IYDNDSVINK WVNMGIKGWR LDVADELPTK 370 380 390 400 410 420 FIRELKKELK KADDDSILIG EVWEDASNKI SYGQRRSYLL GEELDSVMGY PFRNNMFSFL 430 440 450 460 470 480 KGEINSYELC NRYMQIKENY PKESFRSNLN LIGTHDVTRA KTELNDDVDL VKLAVAIQMT 490 500 510 520 530 540 FEGVPYIYYG DEAGLCGGVD PDNRRTYPWK NEDEDMLNFY RDVIKIRNKN KLLSSGNTEF 550 560 570 580 590 600 IYTNNDSVFS FIRVNENNDR MLILVNRSEN VESISLCIES SFIEEIPIKY SLKNANSTIQ 610 620 IENNELKVDL DSKSFRIFRV N

References

[1]

"The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome." Sebaihia M., Wren B.W., Mullany P., Fairweather N.F., Minton N., Stabler R., Thomson N.R., Roberts A.P., Cerdeno-Tarraga A.M., Wang H., Holden M.T.G., Wright A., Churcher C., Quail M.A., Baker S., Bason N., Brooks K., Chillingworth T. , Cronin A., Davis P., Dowd L., Fraser A., Feltwell T., Hance Z., Holroyd S., Jagels K., Moule S., Mungall K., Price C., Rabbinowitsch E., Sharp S., Simmonds M., Stevens K., Unwin L., Whithead S., Dupuy B., Dougan G., Barrell B., Parkhill J. Nat. Genet. 38:779-786(2006) [PubMed: 16804543] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 630.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM180355 Genomic DNA. Translation: CAJ67719.1.
RefSeq	YP_001087360.1. NC_009089.1.
3D structure databases
ProteinModelPortal	Q18A77.
ModBase	Search...
Protein-protein interaction databases
STRING	Q18A77.
Protein family/group databases
CAZy	GH13. Glycoside Hydrolase Family 13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	4913421.
GenomeReviews	Gene locus CD0886 in contig AM180355_GR.
KEGG	cdf:CD0886.
NMPDR	fig|1496.1.peg.1758.
PATRIC	19440065. VBICloDif38397_0925.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0366.
HOGENOM	HBG304832.
OMA	HDNEETS.
ProtClustDB	CLSK899118.
Family and domain databases
InterPro	IPR015902. Alpha_amylase. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR006589. Glyco_hydro_13_sub_cat_dom. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. IPR013783. Ig-like_fold. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
PANTHER	PTHR10357. Alpha_amylase. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. [Graphical view]
SMART	SM00642. Aamy. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q18A77_CLOD6

Accession

Primary (citable) accession number: Q18A77

Entry history

Integrated into UniProtKB/TrEMBL:	July 25, 2006
Last sequence update:	July 25, 2006
Last modified:	December 14, 2011
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)