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Protein

Pseudouridine synthase

Gene

rluA

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation, LyaseImported

Keywords - Ligandi

RNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-522-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Name:rluAImported
Ordered Locus Names:CD630_04050Imported
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)Imported
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi272563.CD0405.

Structurei

3D structure databases

ProteinModelPortaliQ188I9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 6561S4 RNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the pseudouridine synthase RsuA family.UniRule annotationSAAS annotation
Contains S4 RNA-binding domain.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105I08. Bacteria.
COG1187. LUCA.
HOGENOMiHOG000044954.
KOiK06183.
OMAiCTVTLHE.
OrthoDBiEOG6130DV.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00093. TIGR00093. 1 hit.
PROSITEiPS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q188I9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKQRIDKI LSNLGYGSRS EIKKYCKQGS VVVNGSEVSN PGTQVDTEND
60 70 80 90 100
EILFNGEEVI YREYIYLMMN KPDGYISATT DKYDPTVLDL IDLSYLAFEP
110 120 130 140 150
FPVGRLDKDT EGLLVLTNDG KLSHRVLSPK KHVPKTYYAK IDGVVTEEDV
160 170 180 190 200
EAFLEGVVLD DRYKTMPSQL NILKSDDESE IELTIHEGKF HQVKRMFESV
210 220 230 240
GKKVVYLKRL SMGNLKLDES LELGEYRELT DEEVKLIEER
Length:240
Mass (Da):27,442
Last modified:July 25, 2006 - v1
Checksum:iBABA35B7F780D91C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67226.1.
RefSeqiWP_011860778.1. NZ_CP010905.1.
YP_001086871.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ67226; CAJ67226; CD630_04050.
GeneIDi4914944.
KEGGicdf:CD630_04050.
pdc:CDIF630_00533.
PATRICi19439063. VBICloDif38397_0425.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ67226.1.
RefSeqiWP_011860778.1. NZ_CP010905.1.
YP_001086871.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ188I9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD0405.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ67226; CAJ67226; CD630_04050.
GeneIDi4914944.
KEGGicdf:CD630_04050.
pdc:CDIF630_00533.
PATRICi19439063. VBICloDif38397_0425.

Phylogenomic databases

eggNOGiENOG4105I08. Bacteria.
COG1187. LUCA.
HOGENOMiHOG000044954.
KOiK06183.
OMAiCTVTLHE.
OrthoDBiEOG6130DV.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-522-MONOMER.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR000748. PsdUridine_synth_RsuA/RluB/E/F.
IPR018496. PsdUridine_synth_RsuA/RluB_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00093. TIGR00093. 1 hit.
PROSITEiPS01149. PSI_RSU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 630Imported.

Entry informationi

Entry nameiQ188I9_PEPD6
AccessioniPrimary (citable) accession number: Q188I9
Entry historyi
Integrated into UniProtKB/TrEMBL: July 25, 2006
Last sequence update: July 25, 2006
Last modified: May 11, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.