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Protein

30S ribosomal protein S2

Gene

rpsB

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-2350-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S2UniRule annotation
Gene namesi
Name:rpsBUniRule annotation
Ordered Locus Names:CD630_21400
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 23723730S ribosomal protein S2PRO_1000003936Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272563.CD2140.

Structurei

3D structure databases

ProteinModelPortaliQ185S8.
SMRiQ185S8. Positions 9-226.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S2P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CE9. Bacteria.
COG0052. LUCA.
HOGENOMiHOG000071892.
KOiK02967.
OMAiRYIYCAR.
OrthoDBiEOG6XWV6P.

Family and domain databases

HAMAPiMF_00291_B. Ribosomal_S2_B.
InterProiIPR001865. Ribosomal_S2.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR12534. PTHR12534. 1 hit.
PfamiPF00318. Ribosomal_S2. 1 hit.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01011. rpsB_bact. 1 hit.
PROSITEiPS00962. RIBOSOMAL_S2_1. 1 hit.
PS00963. RIBOSOMAL_S2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q185S8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVISMKQLL EAGVHFGHQT RRWNPKMAKY IFTERNGIYI IDLQKTVKKV
60 70 80 90 100
EEAYKFTKEV AETGKPILFV GTKKQAQDAI KDEAERCGMY FVNERWLGGM
110 120 130 140 150
LTNHKTIKTR INKLRELEKM EEEGVFNVLP KKEVIKLRAE KEKLEKYLGG
160 170 180 190 200
IKDMPELPGA MFVVDPRKEN IAIQEAHRLG IPVVGIVDTN CDPEQLDFAI
210 220 230
PGNDDAIRAV KLITGAMATA VIEGRQGAEE EVAEDQE
Length:237
Mass (Da):26,843
Last modified:July 25, 2006 - v1
Checksum:i3EFEF91ABF6E7DF2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ69025.1.
RefSeqiWP_003424537.1. NZ_CP010905.1.
YP_001088654.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ69025; CAJ69025; CD630_21400.
GeneIDi4913120.
KEGGicdf:CD630_21400.
pdc:CDIF630_02371.
PATRICi19442733. VBICloDif38397_2253.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ69025.1.
RefSeqiWP_003424537.1. NZ_CP010905.1.
YP_001088654.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ185S8.
SMRiQ185S8. Positions 9-226.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD2140.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ69025; CAJ69025; CD630_21400.
GeneIDi4913120.
KEGGicdf:CD630_21400.
pdc:CDIF630_02371.
PATRICi19442733. VBICloDif38397_2253.

Phylogenomic databases

eggNOGiENOG4105CE9. Bacteria.
COG0052. LUCA.
HOGENOMiHOG000071892.
KOiK02967.
OMAiRYIYCAR.
OrthoDBiEOG6XWV6P.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-2350-MONOMER.

Family and domain databases

HAMAPiMF_00291_B. Ribosomal_S2_B.
InterProiIPR001865. Ribosomal_S2.
IPR005706. Ribosomal_S2_bac/mit/plastid.
IPR018130. Ribosomal_S2_CS.
IPR023591. Ribosomal_S2_flav_dom.
[Graphical view]
PANTHERiPTHR12534. PTHR12534. 1 hit.
PfamiPF00318. Ribosomal_S2. 1 hit.
[Graphical view]
PRINTSiPR00395. RIBOSOMALS2.
SUPFAMiSSF52313. SSF52313. 1 hit.
TIGRFAMsiTIGR01011. rpsB_bact. 1 hit.
PROSITEiPS00962. RIBOSOMAL_S2_1. 1 hit.
PS00963. RIBOSOMAL_S2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 630.

Entry informationi

Entry nameiRS2_PEPD6
AccessioniPrimary (citable) accession number: Q185S8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 25, 2006
Last modified: November 11, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.