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Protein
Submitted name:

SCP-Like extracellular protein

Gene

scl-8

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
SCP-Like extracellular proteinImported
Gene namesi
Name:scl-8Imported
ORF Names:C39E9.6Imported, CELE_C39E9.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiC39E9.6; CE05389; WBGene00008030; scl-8.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1616Sequence analysisAdd
BLAST
Chaini17 – 210194Sequence analysisPRO_5004186849Add
BLAST

Proteomic databases

EPDiQ18540.
PaxDbiQ18540.

Interactioni

Protein-protein interaction databases

STRINGi6239.C39E9.6.

Structurei

3D structure databases

ProteinModelPortaliQ18540.
SMRiQ18540. Positions 23-210.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini21 – 183163SCPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the CRISP family.SAAS annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG3017. Eukaryota.
COG2340. LUCA.
GeneTreeiENSGT00760000119004.
HOGENOMiHOG000036879.
InParanoidiQ18540.
OMAiNGTYMPR.
OrthoDBiEOG7F7WB4.
PhylomeDBiQ18540.

Family and domain databases

Gene3Di3.40.33.10. 1 hit.
InterProiIPR001283. Allrgn_V5/Tpx1.
IPR014044. CAP_domain.
IPR002413. V5_allergen.
[Graphical view]
PANTHERiPTHR10334. PTHR10334. 1 hit.
PfamiPF00188. CAP. 1 hit.
[Graphical view]
PRINTSiPR00838. V5ALLERGEN.
PR00837. V5TPXLIKE.
SMARTiSM00198. SCP. 1 hit.
[Graphical view]
SUPFAMiSSF55797. SSF55797. 1 hit.

Sequencei

Sequence statusi: Complete.

Q18540-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTLLVLAVA CVGVYAQFSE GGKQSILNAH NDIRSRIAKG NYVAKGNRKE
60 70 80 90 100
SATNMLKMKW DSSLEQSAQN YANGCHMQHS TNDKTIGENL YWEWSGDPFS
110 120 130 140 150
DLDKFGKIAT VAWDHEFEQF GWNSNKFSLA LFNTGVAHAT QIAWAPTGKI
160 170 180 190 200
GCGVKNCGRD ARRGGLFQVA IVCQYRVRGN FFFKNIYNSG ATCSACPAGT
210
SCEQSTGLCA
Length:210
Mass (Da):23,030
Last modified:November 1, 1996 - v1
Checksum:i06AEA89CD24D0E2F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94332.1.
PIRiT19849.
RefSeqiNP_502510.1. NM_070109.1.
UniGeneiCel.13367.

Genome annotation databases

EnsemblMetazoaiC39E9.6; C39E9.6; WBGene00008030.
GeneIDi183345.
KEGGicel:CELE_C39E9.6.
UCSCiC39E9.6. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94332.1.
PIRiT19849.
RefSeqiNP_502510.1. NM_070109.1.
UniGeneiCel.13367.

3D structure databases

ProteinModelPortaliQ18540.
SMRiQ18540. Positions 23-210.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C39E9.6.

Proteomic databases

EPDiQ18540.
PaxDbiQ18540.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC39E9.6; C39E9.6; WBGene00008030.
GeneIDi183345.
KEGGicel:CELE_C39E9.6.
UCSCiC39E9.6. c. elegans.

Organism-specific databases

CTDi183345.
WormBaseiC39E9.6; CE05389; WBGene00008030; scl-8.

Phylogenomic databases

eggNOGiKOG3017. Eukaryota.
COG2340. LUCA.
GeneTreeiENSGT00760000119004.
HOGENOMiHOG000036879.
InParanoidiQ18540.
OMAiNGTYMPR.
OrthoDBiEOG7F7WB4.
PhylomeDBiQ18540.

Miscellaneous databases

NextBioi920798.

Family and domain databases

Gene3Di3.40.33.10. 1 hit.
InterProiIPR001283. Allrgn_V5/Tpx1.
IPR014044. CAP_domain.
IPR002413. V5_allergen.
[Graphical view]
PANTHERiPTHR10334. PTHR10334. 1 hit.
PfamiPF00188. CAP. 1 hit.
[Graphical view]
PRINTSiPR00838. V5ALLERGEN.
PR00837. V5TPXLIKE.
SMARTiSM00198. SCP. 1 hit.
[Graphical view]
SUPFAMiSSF55797. SSF55797. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ18540_CAEEL
AccessioniPrimary (citable) accession number: Q18540
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.