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Protein
Submitted name:

SCP-Like extracellular protein

Gene

scl-6

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

ReactomeiR-CEL-6798695. Neutrophil degranulation.

Names & Taxonomyi

Protein namesi
Submitted name:
SCP-Like extracellular proteinImported
Gene namesi
Name:scl-6Imported
ORF Names:C39E9.4Imported, CELE_C39E9.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiC39E9.4; CE05387; WBGene00008028; scl-6.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_500418677819 – 209Sequence analysisAdd BLAST191

Proteomic databases

PaxDbiQ18538.

Expressioni

Gene expression databases

BgeeiWBGene00008028.

Interactioni

Protein-protein interaction databases

DIPiDIP-25010N.
MINTiMINT-1055821.
STRINGi6239.C39E9.4.

Structurei

3D structure databases

ProteinModelPortaliQ18538.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini23 – 182SCPInterPro annotationAdd BLAST160

Sequence similaritiesi

Belongs to the CRISP family.SAAS annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG3017. Eukaryota.
COG2340. LUCA.
GeneTreeiENSGT00760000119004.
HOGENOMiHOG000036879.
InParanoidiQ18538.
OMAiDLHNSFR.
OrthoDBiEOG091G0D4V.
PhylomeDBiQ18538.

Family and domain databases

Gene3Di3.40.33.10. 1 hit.
InterProiIPR001283. Allrgn_V5/Tpx1.
IPR014044. CAP_domain.
IPR002413. V5_allergen.
[Graphical view]
PANTHERiPTHR10334. PTHR10334. 1 hit.
PfamiPF00188. CAP. 1 hit.
[Graphical view]
PRINTSiPR00838. V5ALLERGEN.
PR00837. V5TPXLIKE.
SMARTiSM00198. SCP. 1 hit.
[Graphical view]
SUPFAMiSSF55797. SSF55797. 1 hit.

Sequencei

Sequence statusi: Complete.

Q18538-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSLLVFATS LLIVLVDAEF SSSTQQFIVD LHNSFRSKLA TGTYSINGTL
60 70 80 90 100
KPAGSNIRKM SWDSTLATSA QTYANTCPTG FSNTQGTGEN LYWRTTSANI
110 120 130 140 150
SGLDIYGGAA SVSWEQEFQK YGWATNYFSQ ELFDTGVGNG TQMAWAKTNL
160 170 180 190 200
VGCGVKNCGK DSTGLNKVAV VCHYKPLGRY VDQMIYTAGF TCSQCPTGTS

CDQTTGLCA
Length:209
Mass (Da):22,459
Last modified:November 1, 1996 - v1
Checksum:iD9A915316027AFAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94330.1.
PIRiT19847.
RefSeqiNP_502508.1. NM_070107.1.
UniGeneiCel.13369.

Genome annotation databases

EnsemblMetazoaiC39E9.4; C39E9.4; WBGene00008028.
GeneIDi183343.
KEGGicel:CELE_C39E9.4.
UCSCiC39E9.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CAA94330.1.
PIRiT19847.
RefSeqiNP_502508.1. NM_070107.1.
UniGeneiCel.13369.

3D structure databases

ProteinModelPortaliQ18538.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25010N.
MINTiMINT-1055821.
STRINGi6239.C39E9.4.

Proteomic databases

PaxDbiQ18538.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC39E9.4; C39E9.4; WBGene00008028.
GeneIDi183343.
KEGGicel:CELE_C39E9.4.
UCSCiC39E9.4. c. elegans.

Organism-specific databases

CTDi183343.
WormBaseiC39E9.4; CE05387; WBGene00008028; scl-6.

Phylogenomic databases

eggNOGiKOG3017. Eukaryota.
COG2340. LUCA.
GeneTreeiENSGT00760000119004.
HOGENOMiHOG000036879.
InParanoidiQ18538.
OMAiDLHNSFR.
OrthoDBiEOG091G0D4V.
PhylomeDBiQ18538.

Enzyme and pathway databases

ReactomeiR-CEL-6798695. Neutrophil degranulation.

Gene expression databases

BgeeiWBGene00008028.

Family and domain databases

Gene3Di3.40.33.10. 1 hit.
InterProiIPR001283. Allrgn_V5/Tpx1.
IPR014044. CAP_domain.
IPR002413. V5_allergen.
[Graphical view]
PANTHERiPTHR10334. PTHR10334. 1 hit.
PfamiPF00188. CAP. 1 hit.
[Graphical view]
PRINTSiPR00838. V5ALLERGEN.
PR00837. V5TPXLIKE.
SMARTiSM00198. SCP. 1 hit.
[Graphical view]
SUPFAMiSSF55797. SSF55797. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ18538_CAEEL
AccessioniPrimary (citable) accession number: Q18538
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.