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Protein

30S ribosomal protein S21

Gene

rpsU

Organism
Peptoclostridium difficile (strain 630) (Clostridium difficile)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-2664-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S21UniRule annotation
Gene namesi
Name:rpsUUniRule annotation
Ordered Locus Names:CD630_24460
OrganismiPeptoclostridium difficile (strain 630) (Clostridium difficile)
Taxonomic identifieri272563 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaePeptoclostridium
Proteomesi
  • UP000001978 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 595930S ribosomal protein S21PRO_0000266656Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272563.CD2446a.

Structurei

3D structure databases

ProteinModelPortaliQ182D5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S21P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VCC. Bacteria.
COG0828. LUCA.
HOGENOMiHOG000157460.
KOiK02970.
OMAiKRHFKRL.
OrthoDBiEOG6FBX3Z.

Family and domain databases

HAMAPiMF_00358. Ribosomal_S21.
InterProiIPR001911. Ribosomal_S21.
[Graphical view]
PfamiPF01165. Ribosomal_S21. 1 hit.
[Graphical view]
PRINTSiPR00976. RIBOSOMALS21.
ProDomiPD005521. Ribosomal_S21. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00030. S21p. 1 hit.

Sequencei

Sequence statusi: Complete.

Q182D5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEVRVRENE TLDSALRRFK RQCAMSGIMS EVRKREHYDK PSVKRKKKAE

AARRKNAKK
Length:59
Mass (Da):7,020
Last modified:July 25, 2006 - v1
Checksum:i353B3F2B8BCD5DC0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ69333.1.
RefSeqiWP_003416618.1. NZ_CP010905.1.
YP_001088960.1. NC_009089.1.

Genome annotation databases

EnsemblBacteriaiCAJ69333; CAJ69333; CD630_24461.
GeneIDi4924886.
KEGGicdf:CD630_24461.
pdc:CDIF630_02691.
PATRICi19443361. VBICloDif38397_2567.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180355 Genomic DNA. Translation: CAJ69333.1.
RefSeqiWP_003416618.1. NZ_CP010905.1.
YP_001088960.1. NC_009089.1.

3D structure databases

ProteinModelPortaliQ182D5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272563.CD2446a.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ69333; CAJ69333; CD630_24461.
GeneIDi4924886.
KEGGicdf:CD630_24461.
pdc:CDIF630_02691.
PATRICi19443361. VBICloDif38397_2567.

Phylogenomic databases

eggNOGiENOG4105VCC. Bacteria.
COG0828. LUCA.
HOGENOMiHOG000157460.
KOiK02970.
OMAiKRHFKRL.
OrthoDBiEOG6FBX3Z.

Enzyme and pathway databases

BioCyciCDIF272563:GJFE-2664-MONOMER.

Family and domain databases

HAMAPiMF_00358. Ribosomal_S21.
InterProiIPR001911. Ribosomal_S21.
[Graphical view]
PfamiPF01165. Ribosomal_S21. 1 hit.
[Graphical view]
PRINTSiPR00976. RIBOSOMALS21.
ProDomiPD005521. Ribosomal_S21. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR00030. S21p. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 630.

Entry informationi

Entry nameiRS21_PEPD6
AccessioniPrimary (citable) accession number: Q182D5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: July 25, 2006
Last modified: November 11, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.